Locus 6360

Sequence ID X_DroMel_CAF1
Location 16,010,601 – 16,010,720
Length 119
Max. P 0.756242
window10375

overview

Window 5

Location 16,010,601 – 16,010,720
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.61
Mean single sequence MFE -21.14
Consensus MFE -16.46
Energy contribution -16.74
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.73
Structure conservation index 0.78
SVM decision value 0.49
SVM RNA-class probability 0.756242
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16010601 119 + 22224390
CACAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAUUUACCAUUUACCAUUUACCAUUUACCAGUUACCUGAUCUUUGAGAC-AACCGCAACCCA
..........(((...(((..((((((((.((((((((((.......)))))))))).)...........................(((....))))))))))...)-))..)))..... ( -22.10)
>DroSec_CAF1 78526 98 + 1
CACAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAUUUACCA---------------------GUUACCUGAUCUUUGAGAC-AACCGCAACCCA
..........(((...(((..((((((((.((((((((((.......)))))))))).)......((---------------------(....))))))))))...)-))..)))..... ( -22.10)
>DroSim_CAF1 73024 99 + 1
CACAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAGUUACCAU--------------------GUUACCUGAUCUUUGAGAC-AACCGCAACCCA
..........(((...(((..(((((((..((((((((((.......)))))))))).(((.((....--------------------..)).))))))))))...)-))..)))..... ( -21.20)
>DroEre_CAF1 76972 98 + 1
CAGAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAGUUACCAGUUACCAGUUACCA---------------------GUUACCUGAUCUUCGAGAC-GACCGCAACCCA
..........(((...(((..(.(((((((((..((((((.......)))))).....))))...((---------------------(....)))))))).)...)-))..)))..... ( -15.30)
>DroYak_CAF1 62018 99 + 1
CAGAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAUCUACCA---------------------GUUACCUGAUCUUUGAGACCAACCGCAACCCA
..........(((...((((.((((((((.((((((((((.......)))))))))).)......((---------------------(....))))))))))...))))..)))..... ( -25.00)
>consensus
CACAAACAAAUGCAUUUUGGGCAAAGAUGCUGAAUGGUAGUUACCAUUUACCAUUUACCAUUUACCA_____________________GUUACCUGAUCUUUGAGAC_AACCGCAACCCA
..........(((....(((....(((((.((((((((((.......)))))))))).))))).))).....................(((..((........))...))).)))..... (-16.46 = -16.74 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:39 2006