Locus 6359

Sequence ID X_DroMel_CAF1
Location 16,010,284 – 16,010,404
Length 120
Max. P 0.500000
window10374

overview

Window 4

Location 16,010,284 – 16,010,404
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -29.10
Consensus MFE -29.10
Energy contribution -29.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 1.00
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16010284 120 + 22224390
UUGUUCGUGGUGCUUCGGUAAUCUGGAGGACUGUGGCGAUAAAACAUCAAAACAAAAUUCCGAAAGAAACGAUUAAUCUUUUGGUCAUUUUCAUUUGAUUGACGGAUGGGAAGUAAAUAC
(((((((..((.((((((....)))))).))..))..(((.....)))..)))))....((((((((.........))))))))...((..((((((.....))))))..))........ ( -29.10)
>DroSec_CAF1 78211 120 + 1
UUGUUCGUGGUGCUUCGGUAAUCUGGAGGACUGUGGCGAUAAAACAUCAAAACAAAAUUCCGAAAGAAACGAUUAAUCUUUUGGUCAUUUUCAUUUGAUUGACGGAUGGGAAGUAAAUAC
(((((((..((.((((((....)))))).))..))..(((.....)))..)))))....((((((((.........))))))))...((..((((((.....))))))..))........ ( -29.10)
>DroSim_CAF1 72724 120 + 1
UUGUUCGUGGUGCUUCGGUAAUCUGGAGGACUGUGGCGAUAAAACAUCAAAACAAAAUUCCGAAAGAAACGAUUAAUCUUUUGGUCAUUUUCAUUUGAUUGACGGAUGGGAAGUAAAUAC
(((((((..((.((((((....)))))).))..))..(((.....)))..)))))....((((((((.........))))))))...((..((((((.....))))))..))........ ( -29.10)
>DroEre_CAF1 76675 120 + 1
UUGUUCGUGGUGCUUCGGUAAUCUGGAGGACUGUGGCGAUAAAACAUCAAAACAAAAUUCCGAAAGAAACGAUUAAUCUUUUGGUCAUUUUCAUUUGAUUGACGGAUGGGAAGUAAAUAC
(((((((..((.((((((....)))))).))..))..(((.....)))..)))))....((((((((.........))))))))...((..((((((.....))))))..))........ ( -29.10)
>DroYak_CAF1 61715 120 + 1
UUGUUCGUGGUGCUUCGGUAAUCUGGAGGACUGUGGCGAUAAAACAUCAAAACAAAAUUCCGAAAGAAACGAUUAAUCUUUUGGUCAUUUUCAUUUGAUUGACGGAUGGGAAGUAAAUAC
(((((((..((.((((((....)))))).))..))..(((.....)))..)))))....((((((((.........))))))))...((..((((((.....))))))..))........ ( -29.10)
>consensus
UUGUUCGUGGUGCUUCGGUAAUCUGGAGGACUGUGGCGAUAAAACAUCAAAACAAAAUUCCGAAAGAAACGAUUAAUCUUUUGGUCAUUUUCAUUUGAUUGACGGAUGGGAAGUAAAUAC
(((((((..((.((((((....)))))).))..))..(((.....)))..)))))....((((((((.........))))))))...((..((((((.....))))))..))........ (-29.10 = -29.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:38 2006