Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,009,526 – 16,009,646 |
Length | 120 |
Max. P | 0.961071 |
Location | 16,009,526 – 16,009,646 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.68 |
Mean single sequence MFE | -27.88 |
Consensus MFE | -15.94 |
Energy contribution | -17.94 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.15 |
Mean z-score | -2.43 |
Structure conservation index | 0.57 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16009526 120 + 22224390 CAUUUACGCAAGCAUAUACUAGUUAUCUGCUAAAGCGACAAUCGUGAAAGUCUUAAUCAGAUAGAUGUGAAACCAAAAAACUAUUUGUGUCAAAGUUGGCAGAUAGAAGGACAGAUGCAG ...........((((...((..(((((((((((...((((.....(.....).....(((((((...((....)).....)))))))))))....)))))))))))..))....)))).. ( -26.10) >DroSec_CAF1 77533 116 + 1 CAUUUACGCAAGCAUAUGCUAGUUAUCUGCUAAAGCGACAAUCGUGAAAGUCAUAUACAGAUAGAUGUAAAACCA----ACUAUUUGGGCCAAAGCUGGCAGAUAAAAGGACAGAUGCAG ...........((((.((((..(((((((((..((((((..........))).....(((((((.((......))----.))))))).......))))))))))))..)).)).)))).. ( -32.00) >DroSim_CAF1 72003 120 + 1 CAUUUACGCAAGCAUAUGCUAGUUAUCUGCCAAAGCGACAAUCGUGAAAGUCAUAUACAGAUAGAUGUGAAACCAAAAAACUAUUUAGGCCAAAGUUGGCAGAUAAAAGGACAGAUGCAG ...........((((.((((..(((((((((((.(((.....))).....((((((........)))))).........................)))))))))))..)).)).)))).. ( -30.00) >DroEre_CAF1 75876 95 + 1 CAUUUACGCAAGUAUAUACUAGUUA--------------GGUCGUGAAAGUCUUAUUUAGAUAGAUGUAA--------AUCUAUUUGGGGGAGAA---ACAGCCAAGUGGACAGAUGCAA (((((((....)).....(((.((.--------------(((.((.....((((.(((((((((((....--------))))))))))).)))).---)).))))).)))..)))))... ( -23.40) >consensus CAUUUACGCAAGCAUAUACUAGUUAUCUGCUAAAGCGACAAUCGUGAAAGUCAUAUACAGAUAGAUGUAAAACCA___AACUAUUUGGGCCAAAGUUGGCAGAUAAAAGGACAGAUGCAG ...........((((...((..((((((((((..(((.....)))............(((((((................))))))).........))))))))))..))....)))).. (-15.94 = -17.94 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:37 2006