Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,009,372 – 16,009,486 |
Length | 114 |
Max. P | 0.929670 |
Location | 16,009,372 – 16,009,486 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.80 |
Mean single sequence MFE | -33.36 |
Consensus MFE | -27.28 |
Energy contribution | -27.12 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.00 |
Structure conservation index | 0.82 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16009372 114 + 22224390 UUUUU---UUUUUUUUGUUGUUUCCUUCUUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU---GGCCAGCAUGUCCCAUGCUG .....---............(((((........)))))..(((.(...(((((.((((((..((.(..(....)..).)))).)))).)))))...)---.)))((((((...)))))). ( -32.10) >DroSec_CAF1 77392 101 + 1 UCUUU----------------UUCCUUCAUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU---GGUCAGCAUGUCCCAUGCUG .((((----------------((((........))))))))((....))((((.((((((..((.(..(....)..).)))).)))).)))).....---...(((((((...))))))) ( -34.30) >DroSim_CAF1 71862 101 + 1 UCUUU----------------UUCCUUCAUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU---GGUCAGCAUGUCCCAUGCUG .((((----------------((((........))))))))((....))((((.((((((..((.(..(....)..).)))).)))).)))).....---...(((((((...))))))) ( -34.30) >DroEre_CAF1 75738 98 + 1 ---------------UU----UUCCUUCUUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU---GGUCAGCAUGUCCCAUGCUG ---------------((----((((........))))))..((....))((((.((((((..((.(..(....)..).)))).)))).)))).....---...(((((((...))))))) ( -30.20) >DroYak_CAF1 61055 120 + 1 UUUUUUUUUUUUUUUUUUGCCUUACUUCUUUUUGGAGAAAGGCGAAAGUGUGUGAGUUCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGUGGUGGUCAGCAUGUCCCAUGCUG .............((((((((((.((((.....)))).)))))))))).((((.(((.((..((.(..(....)..).))..))))).))))...........(((((((...))))))) ( -35.90) >consensus UCUUU__________U_____UUCCUUCUUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU___GGUCAGCAUGUCCCAUGCUG ........................((((.....))))....((....))((((.((((((..((.(..(....)..).)))).)))).))))...........(((((((...))))))) (-27.28 = -27.12 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:36 2006