Locus 6356

Sequence ID X_DroMel_CAF1
Location 16,009,005 – 16,009,107
Length 102
Max. P 0.666166
window10371

overview

Window 1

Location 16,009,005 – 16,009,107
Length 102
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.15
Mean single sequence MFE -29.57
Consensus MFE -23.55
Energy contribution -26.05
Covariance contribution 2.50
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.80
SVM decision value 0.28
SVM RNA-class probability 0.666166
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16009005 102 - 22224390
GUGGUCGAUGUC------------GAAGUC------GAUGUCGAGGUAGAUGGUCACAAUUUAAAUUAAUGAUUUUUUCUACGCUUGAUCUGUGAUAGUGACUGACAUUUUCCCGUCAUU
...((((..(((------------(..(((------(..(((((((((((.(((((.............)))))...))))).))))))...))))..)))))))).............. ( -24.62)
>DroSim_CAF1 71481 102 - 1
GUGGUCGAUGUC------------GAAGUC------GAUGUCGAGGUAGAUGGUCACAAUUUAAAUUAAUGAUUUUUUCUACGCUUGAUCUGUGAUAGUGACUGACAUUUUCCCGUCAUU
...((((..(((------------(..(((------(..(((((((((((.(((((.............)))))...))))).))))))...))))..)))))))).............. ( -24.62)
>DroEre_CAF1 75385 108 - 1
GUGGUCGAUGUC------------GAAGUCGAUGUCGAUGUCGAGGUAGAUGGUCACAAUUUAAAUUAAUGAUUUUUUCUACGCUUGAUCUGUGAUAGUGACUGACAUUUUCCCGUCAUU
(.((..((((((------------..(((((.(((((..(((((((((((.(((((.............)))))...))))).))))))...))))).)))))))))))..)))...... ( -32.32)
>DroYak_CAF1 60684 120 - 1
GUGGUCGAUGUCGAUGUCGAAGUCGAAGUCGAUGUCGAUGUCGAGGUAGAUGGUCACAAUUUAAAUUAAUGAUUUUUUCUACGCUUGAUCUGUGAUAGUGACUGACAUUUUCCCGUCAUU
...((((((((((((.(((....))).))))))))))))(((((((((((.(((((.............)))))...))))).)))))).......((((((.(........).)))))) ( -36.72)
>consensus
GUGGUCGAUGUC____________GAAGUC______GAUGUCGAGGUAGAUGGUCACAAUUUAAAUUAAUGAUUUUUUCUACGCUUGAUCUGUGAUAGUGACUGACAUUUUCCCGUCAUU
(.((..((((((..............(((((.(((((..(((((((((((.(((((.............)))))...))))).))))))...))))).)))))))))))..)))...... (-23.55 = -26.05 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:35 2006