Locus 6354

Sequence ID X_DroMel_CAF1
Location 16,008,211 – 16,008,310
Length 99
Max. P 0.986049
window10369

overview

Window 9

Location 16,008,211 – 16,008,310
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.19
Mean single sequence MFE -26.54
Consensus MFE -23.82
Energy contribution -23.50
Covariance contribution -0.32
Combinations/Pair 1.09
Mean z-score -1.99
Structure conservation index 0.90
SVM decision value 2.03
SVM RNA-class probability 0.986049
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16008211 99 - 22224390
U-------------UUU--------UUUUUUUCUUCUGUAUUUUAGCCCGACAAUCGGGCACUCUGGCGCUUCAGCGGCGUCAUUAUCAGAUUGAGAUUGAUGGCUUAUACCUCAAGAAU
.-------------...--------....((((.((((.......(((((.....)))))....(((((((.....)))))))....))))..))))((((.((......)))))).... ( -28.10)
>DroSec_CAF1 76082 95 - 1
U-------------UUU--------UUUUU----UUUGUAUUUUAGCCCGACAAUCGGGCACUCUGGCGCUUCAGCGGCGUCAUUAUCAGAUUGAGAUUGAUGGCUUAUACCUCAAGAAU
.-------------..(--------(((..----((((.......(((((.....)))))....(((((((.....)))))))....))))..))))((((.((......)))))).... ( -25.60)
>DroSim_CAF1 70710 95 - 1
U-------------UUU--------UUUUU----UUUGUAUUUUAGCCCGACAAUCGGGCACUCUGGCGCUUCAGCGGCGUCAUUAUCAGAUUGAGAUUGAUGGCUUAUACCUCAAGAAU
.-------------..(--------(((..----((((.......(((((.....)))))....(((((((.....)))))))....))))..))))((((.((......)))))).... ( -25.60)
>DroEre_CAF1 74602 92 - 1
U------------------------UAUUU----UUUGUAUUUUAGCCCGACAAUCGGGCACUCUGGCGCUUCAGCGGCGUCAUUAUCAGAUUGAGAUUGAUGGCUUAUACCUCGAGAAU
.------------------------.....----...........(((((.....))))).(((.(.(((....))).)(((((((((.......)).))))))).........)))... ( -25.80)
>DroYak_CAF1 59918 116 - 1
UGGCUGUGUUAUUUUUUUUUUCGAAUUUUU----UUUGUAUUUUAGCCCGACAAUCGGGCACUCUGGCGCUUCAGCGGCGUCAUUAUCAGAUUGAGAUUGAUGGCUUAUACCUCAAGAAU
.((....((((((.((((..((........----...........(((((.....)))))....(((((((.....)))))))......))..))))..)))))).....))........ ( -27.60)
>consensus
U_____________UUU________UUUUU____UUUGUAUUUUAGCCCGACAAUCGGGCACUCUGGCGCUUCAGCGGCGUCAUUAUCAGAUUGAGAUUGAUGGCUUAUACCUCAAGAAU
..................................((((.......(((((.....)))))....(((((((.....)))))))....))))......((((.((......)))))).... (-23.82 = -23.50 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:33 2006