| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,004,036 – 16,004,156 |
| Length | 120 |
| Max. P | 0.953345 |
| Location | 16,004,036 – 16,004,156 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.81 |
| Mean single sequence MFE | -19.36 |
| Consensus MFE | -16.07 |
| Energy contribution | -17.03 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16004036 120 - 22224390 GCCAGGCAAAAGAAUACGCUGUUUGUAUCUUUUCCAAUAUGUUUAUAUUUUUCUUUAGCCCACCCCUGCCACCCUAUGAAUAUUUAAAGAAAAAUAUAAAUCCCAAUUCUAAUGAAAAGC ....((.((((((.((((.....)))))))))))).....(((((((((((((((((((........))((.....))......))))))))))))))))).....(((....))).... ( -20.60) >DroSec_CAF1 71979 119 - 1 GCCAGGCAAAAGAAUACGCUGUUUGUAUCUUUUCCAAUAUGUUUAUAUUUUUCUUUAGCCCACCCCUG-CACCCUACGAAUAUUUAAAGAAAAAUAUAAAUCCCAAUUCUAAUGAAAAGC ....((.((((((.((((.....)))))))))))).....((((((((((((((((((..........-..............)))))))))))))))))).....(((....))).... ( -20.46) >DroSim_CAF1 66601 119 - 1 GCCAGGCAAAAGAAUACGCUGUUUGUAUCUUUUCCAAUAUGUUUAUAUUUUUCUUUAGCCCACCCCUA-CACCCUACGAAUAUUUAAAGAAAAAUAUAAAUCCCAAUUCUAAUGAAAAGC ....((.((((((.((((.....)))))))))))).....((((((((((((((((((..........-..............)))))))))))))))))).....(((....))).... ( -20.46) >DroEre_CAF1 71123 116 - 1 GCCAGGCAAAA-AAUACGCUGUUUGUAUCUUUUCCAAUAUGUUUAUAUUUG-CCUUGGCCCACCCCUU-CAUCCUACCAAUAAUUCAAGAAAAA-AUAAAUCCCAAUUCUAAUGAAAAGC ((((((((((.-.(((.((((((.(........).)))).)).))).))))-)).)))).........-..............((((((((...-...........))))..)))).... ( -15.24) >DroYak_CAF1 56268 119 - 1 GCCAGGCAAAAGAAUACGCUGUUUGUAUCUUUUCCAAUAUGUUUAUAUUUUUCUUUGGCCCACCCCCA-CACCCUACGAAUAUUUAAAGAAAAAUAUAAAUCCCAAUUCUAAUGAAAAGC ....((.((((((.((((.....)))))))))))).....((((((((((((((((((..........-..............)))))))))))))))))).....(((....))).... ( -20.06) >consensus GCCAGGCAAAAGAAUACGCUGUUUGUAUCUUUUCCAAUAUGUUUAUAUUUUUCUUUAGCCCACCCCUA_CACCCUACGAAUAUUUAAAGAAAAAUAUAAAUCCCAAUUCUAAUGAAAAGC ....((.((((((.((((.....)))))))))))).....((((((((((((((((((.........................)))))))))))))))))).....(((....))).... (-16.07 = -17.03 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:29 2006