Locus 6351

Sequence ID X_DroMel_CAF1
Location 16,003,263 – 16,003,369
Length 106
Max. P 0.927511
window10365

overview

Window 5

Location 16,003,263 – 16,003,369
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.26
Mean single sequence MFE -22.65
Consensus MFE -19.29
Energy contribution -19.05
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.68
Structure conservation index 0.85
SVM decision value 1.18
SVM RNA-class probability 0.927511
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16003263 106 + 22224390
AAAGAACCUGGCCAGAUUGGCAUUUACUGCUGGCACUCGCUCGCAUUCACCCGCAUCAAUCCCUGGCCAUAAACAAAAGUCCAGGCAC--------U------CGGCUAAAAAUACAAAU
........(((((.(((((((......(((.(((....))).))).......))..)))))(((((.(..........).)))))...--------.------.)))))........... ( -23.62)
>DroSec_CAF1 71159 105 + 1
AAAGAACCUGGCCAGAUUGGCAUUUACUGCAGGCACUCGCUCGCAUUCACCCGCAUCAAUCCCUGGCCAUAAACAAGAGUCCA-GCAC--------U------CGGCUAAAAAUACAAAU
......(((((((((((((((......(((..((....))..))).......))..)))))..)))))).......((((...-..))--------)------))).............. ( -24.32)
>DroSim_CAF1 65787 105 + 1
AAAGAACCUGGCCAGAUUGGCAUUUACUGCUGGCACUCGCUCGCAUUCACCCGCAUCAAUCCCUGGCCAUAAACAAAAGUCCA-GCAC--------U------CGGCUAAAAAUACAAAU
........(((((((((((((......(((.(((....))).))).......))..)))))..))))))........((((..-....--------.------.))))............ ( -21.92)
>DroEre_CAF1 70299 118 + 1
AAAGAACCUGGCCAGAUUGGCAUUUACUGCUGGCACUCGCUCGCAUUCACCCG-AUCAAUCCCUGGCCAUAAACAAAAGUCCA-ACACUUCGACACUCCAACACGGCUAAAAAUACAAAU
......((((((((((((((.......(((.(((....))).))).....)))-)))......)))))).........(((..-.......)))..........)).............. ( -22.50)
>DroYak_CAF1 54379 112 + 1
AAAGAACCUGGCCAGAUUGGCAUUUACUGCUGGCACUCGCUCGCAUUCACCCG-AUCAAUCCCUGGCCAUAAACAAAAGUCCA-ACACUCCAACAUU------CGGCUAAAAAUACAAAU
........((((((((((((.......(((.(((....))).))).....)))-)))......))))))........((((..-.............------.))))............ ( -20.89)
>consensus
AAAGAACCUGGCCAGAUUGGCAUUUACUGCUGGCACUCGCUCGCAUUCACCCGCAUCAAUCCCUGGCCAUAAACAAAAGUCCA_GCAC________U______CGGCUAAAAAUACAAAU
......((((((((((((((.......(((.(((....))).)))..........))))))..)))))).........((....))..................)).............. (-19.29 = -19.05 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:28 2006