Locus 6347

Sequence ID X_DroMel_CAF1
Location 16,000,913 – 16,001,028
Length 115
Max. P 0.997131
window10356

overview

Window 6

Location 16,000,913 – 16,001,028
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.76
Mean single sequence MFE -28.44
Consensus MFE -23.56
Energy contribution -23.56
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.89
Structure conservation index 0.83
SVM decision value 2.80
SVM RNA-class probability 0.997131
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16000913 115 + 22224390
AAUUAACAAAUAAAAGUCGGCCUUCCAAAUGGAUUUGUCCAUAUAUGUACGUGUGUAUCCUUAUGUACAAUCAAAUGAAGGCAAAUU--UUUGUGGCCG--UUCUUCCUUUUUUGGCCU-
.........((((((((..((((((...(((((....)))))...((((((((........)))))))).......))))))..)))--)))))(((((--............))))).- ( -34.40)
>DroSec_CAF1 68846 111 + 1
AAUUAACAAAUAAAAGUCGGCCUUCCAAAUGGAUUUGUCCAUAU----ACGUGUGUAUCCUUAUGUACAAUCAAAUAAAGGCAAAUU--UUUGUGGCCG--UUCUUCCUUUU-UGGCCUU
.........((((((((..(((((....(((((....)))))..----..(((..((....))..))).........)))))..)))--)))))(((((--...........-))))).. ( -27.60)
>DroSim_CAF1 63000 111 + 1
AAUUAACAAAUAAAAGUCGGCCUUCCAAAUGGAUUUGUCCAUAU----ACGUGUGUAUCCUUAUGUACAAUCAAAUAAAGGCAAAUU--UUUGUGGCCG--UUCUUCCUUUU-UGGCCUU
.........((((((((..(((((....(((((....)))))..----..(((..((....))..))).........)))))..)))--)))))(((((--...........-))))).. ( -27.60)
>DroEre_CAF1 67957 109 + 1
AAUUAACAAAUAAAAGUCGGCCUUCCAAAUGGAUUUGUCCAU------ACGUGUGUAUCCUUAUGUACAAUCAAAUAAAGGCACAUU--UUUGUGGCCG--UUCUUCCUUUU-UGGCCUU
.........((((((((..(((((....(((((....)))))------..(((..((....))..))).........)))))..)))--)))))(((((--...........-))))).. ( -26.20)
>DroYak_CAF1 52037 113 + 1
AAUUAACAAAUAAAAGUCGGCCUUCCAAAUGGAUUUGUCCAU------ACGUGUGUAUCCUUAUGUACAAUCAAAUAAAGGCAAAUUUUUUUGUGGCCGUGUUCUUCCUUUU-UGGCCUU
.....(((((..(((((..(((((....(((((....)))))------..(((..((....))..))).........)))))..))))))))))(((((.............-))))).. ( -26.42)
>consensus
AAUUAACAAAUAAAAGUCGGCCUUCCAAAUGGAUUUGUCCAUAU____ACGUGUGUAUCCUUAUGUACAAUCAAAUAAAGGCAAAUU__UUUGUGGCCG__UUCUUCCUUUU_UGGCCUU
.....(((((....(((..(((((....(((((....)))))........(((..((....))..))).........)))))..)))..)))))(((((..............))))).. (-23.56 = -23.56 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:20 2006