Locus 6346

Sequence ID X_DroMel_CAF1
Location 16,000,416 – 16,000,536
Length 120
Max. P 0.866582
window10355

overview

Window 5

Location 16,000,416 – 16,000,536
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.62
Mean single sequence MFE -35.30
Consensus MFE -30.60
Energy contribution -30.20
Covariance contribution -0.40
Combinations/Pair 1.12
Mean z-score -1.49
Structure conservation index 0.87
SVM decision value 0.85
SVM RNA-class probability 0.866582
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16000416 120 - 22224390
AUCUAAUCGCAAAAUAGGAAGGUUCCAAUGUGGGUGCCUGGGAAUGCCGCAACCGAGGUGUGCAAUCAGUAUUCCUUUUUAUUUAUUGGCUCCCGCUGCACAGUGGUUUAAUUUUAAAUA
....((((((......(((....)))...(((((.(((.((((((((.(((((....)).))).....))))))))...........))).)))))......))))))............ ( -32.20)
>DroSec_CAF1 68353 117 - 1
AUCUAAUCGCAA-AUAGAAAGGUUCCAAUGUGGGAGCCUGGGAAUGCCGCAACCGAGGUGUGCAAACAGUAUUCCUU-UUAUUUAUUGGCUCCCGCUGCACAGUGGUUUGGAUU-CGAUA
(((.((((.(((-((......((......(((((((((.((((((((.(((((....)).))).....)))))))).-.........))))))))).))......)))))))))-.))). ( -37.30)
>DroSim_CAF1 62502 117 - 1
AUCUAAUCGCAA-AUAGGAAGGUUCCAAUGUGGGAGCCUGGGAAUGCCGCAACCGAGGUGUGCAAUCAGUAUUCCUU-UUAUUUAUUGGCUCCCGCUGCACAGUGGUUUGCUUU-CAAUA
............-....((((((.(((..(((((((((.((((((((.(((((....)).))).....)))))))).-.........))))))))).......)))...)))))-).... ( -38.00)
>DroEre_CAF1 67464 117 - 1
AUCUAAUCGCAA-AUAGGAAGGUUCCAAUGUGGCAGCCUGGGAAUGCGGCAACCGAGGUGUGCAAUCAGUAUUCCCU-UUAUUUAUUGGCCACCACUGCACAGUGGCUUGGGUU-UAAUA
((((((..((.(-(((((.(((((((.....)).)))))((((((((.(((((....)).))).....)))))))).-...)))))).))..(((((....))))).)))))).-..... ( -35.20)
>DroYak_CAF1 51524 117 - 1
AUCUAAUCGCAA-AUAGGAAGGUUCCAAUGUGGGAGCCUGGGAAUGCCGCAACCGAGGUGUGCAAUCAGUAUUCCCU-UUAUUUAUUGGCCAUCACUGCACAGUGGUUUAGUUU-CAAUG
..((((..((.(-(((((.(((((((......)))))))((((((((.(((((....)).))).....)))))))).-...)))))).)).((((((....))))))))))...-..... ( -33.80)
>consensus
AUCUAAUCGCAA_AUAGGAAGGUUCCAAUGUGGGAGCCUGGGAAUGCCGCAACCGAGGUGUGCAAUCAGUAUUCCUU_UUAUUUAUUGGCUCCCGCUGCACAGUGGUUUGGUUU_CAAUA
........((...(((((.(((((((......)))))))((((((((.(((((....)).))).....)))))))).....)))))..))..(((((....))))).............. (-30.60 = -30.20 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:19 2006