Locus 6345

Sequence ID X_DroMel_CAF1
Location 15,999,868 – 15,999,971
Length 103
Max. P 0.841054
window10354

overview

Window 4

Location 15,999,868 – 15,999,971
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.89
Mean single sequence MFE -28.98
Consensus MFE -23.26
Energy contribution -22.70
Covariance contribution -0.56
Combinations/Pair 1.10
Mean z-score -1.73
Structure conservation index 0.80
SVM decision value 0.75
SVM RNA-class probability 0.841054
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15999868 103 - 22224390
--------------AGAGCUCGUCG---UCGUCGUGUCCGUUUUGAGUCAUGUUGCUUUAUAAUAGACUACAGCUUUGGAGUUGUUUUGGCGAUGACUUCGUCGCUUCAUUCUCUUUCCU
--------------.((((.((..(---((((((((((..((..((((......))))...))..))).((((((....))))))....))))))))..))..))))............. ( -27.30)
>DroSec_CAF1 67874 103 - 1
--------------AGAGCUCGUCG---UCGUCGUGUCCGUUUUGAGUCAUGUUGCUUUAUAAUAGACUACAGCUUUGGAGUUGUUUUGGCGAUGACUUCGUCGCUUCAUUCUCUUUCCU
--------------.((((.((..(---((((((((((..((..((((......))))...))..))).((((((....))))))....))))))))..))..))))............. ( -27.30)
>DroSim_CAF1 62025 103 - 1
--------------AGAGCUCGUCG---UCGUCGUGUCCGUUUUGAGUCAUGUUGCUUUAUAAUAGACUACAGCUUUGGAGUUGUUUUGGCGAUGACUUCGUCGCUUCAUUCUCUUUCCU
--------------.((((.((..(---((((((((((..((..((((......))))...))..))).((((((....))))))....))))))))..))..))))............. ( -27.30)
>DroEre_CAF1 66831 107 - 1
----------AAACAGAGCUCGUCG---UUGUCGUGUCCGUUUUGAGUCAUGUUGCUUUAUAAUAGACUACAGCUUUGAAGUUGUUUUGGCGAUGACUUCGUCGCUUCAUUCUCUUUCCU
----------...((((((...(((---..((.(((((..((..((((......))))...))..))).)).))..)))....))))))((((((....))))))............... ( -25.80)
>DroYak_CAF1 51060 120 - 1
AAAGAAACAGAAACGGAGCUCGUCGUCGUCGUCGUGUCCGUUUUGAGUCAUGUUGCUUUAUAAUAGACUACAGCUUUGAAGUUGUUUUGGCGAUGACUUCGUCGCUUCAUUCUCUUUCCU
...((((.((((..(((((.((..((((((((((.(((..((..((((......))))...))..))).((((((....))))))..))))))))))..))..))))).)))).)))).. ( -37.20)
>consensus
______________AGAGCUCGUCG___UCGUCGUGUCCGUUUUGAGUCAUGUUGCUUUAUAAUAGACUACAGCUUUGGAGUUGUUUUGGCGAUGACUUCGUCGCUUCAUUCUCUUUCCU
..............((((((.(.((....)).)(((((..((..((((......))))...))..))).))))))))((((.......(((((((....))))))).......))))... (-23.26 = -22.70 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:18 2006