Locus 6343

Sequence ID X_DroMel_CAF1
Location 15,998,208 – 15,998,325
Length 117
Max. P 0.923228
window10350

overview

Window 0

Location 15,998,208 – 15,998,325
Length 117
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.08
Mean single sequence MFE -33.60
Consensus MFE -33.61
Energy contribution -33.50
Covariance contribution -0.11
Combinations/Pair 1.05
Mean z-score -1.96
Structure conservation index 1.00
SVM decision value 1.15
SVM RNA-class probability 0.923228
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15998208 117 - 22224390
UAACAUAUCCAAAGACAAUGAUUUCGACGCUAAGUUCAGUUGAGUUAAGUCGAGCCAAACCGCGA---AGGCUUGCCAAUGCAAAUAGUCAUAAUUGCUGGCAACCAGAAGUCGAUGUCG
.............((((.(((((((..(((...((((..((......))..))))......))).---.((.((((((..((((.((....)).)))))))))))).))))))).)))). ( -32.50)
>DroSec_CAF1 66265 120 - 1
UAACAUAUCCAAAGACAAUGAUUUCGACGCUAAGUUCAGUUGAGUUAAGUCGAGCCGAACCGCGAAGAAGGCUUGCUAAUGCAAAUAGUCAUAAUUGCUGGCAACCAGAAGUCGAUGUCG
.............((((.(((((((..(((...((((.(((((......)).))).)))).))).....((.((((((..((((.((....)).)))))))))))).))))))).)))). ( -33.00)
>DroSim_CAF1 60438 117 - 1
UAGCAUAUCCAAAGACAAUGAUUUCGACGCUAAGUUCAGUUGAGUUAAGUCGAGCCGAGCCGCGA---AGGCUUGCCAAUGCAAAUAGUCAUAAUUGCUGGCAACCAGAAGUCGAUGUCG
.............((((.(((((((..(((...((((.(((((......)).))).)))).))).---.((.((((((..((((.((....)).)))))))))))).))))))).)))). ( -35.30)
>consensus
UAACAUAUCCAAAGACAAUGAUUUCGACGCUAAGUUCAGUUGAGUUAAGUCGAGCCGAACCGCGA___AGGCUUGCCAAUGCAAAUAGUCAUAAUUGCUGGCAACCAGAAGUCGAUGUCG
.............((((.(((((((..(((...((((.(((((......)).))).)))).))).....((.((((((..((((.((....)).)))))))))))).))))))).)))). (-33.61 = -33.50 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:15 2006