| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,997,007 – 15,997,122 |
| Length | 115 |
| Max. P | 0.725241 |
| Location | 15,997,007 – 15,997,122 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.79 |
| Mean single sequence MFE | -41.28 |
| Consensus MFE | -34.80 |
| Energy contribution | -34.52 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15997007 115 + 22224390 GGGGUUGG-GGCUAAUGAGUCGCUUGGAGUGUCGCACGUGCGUCUACUUUGGCUCUUGAUUGCCGGAAUACUUAAAGACCGAGGUUCCAACCCCGAAACUCCCGU-UUCCCCCAUUC--- ((((((((-((((..((.(((.....(((((((((....))).....((((((........))))))))))))...))))).))))))))))))(((((....))-)))........--- ( -42.50) >DroSec_CAF1 65030 115 + 1 GGGGUUGG-GGCUAAUGAGUCGCUUGGAGUGUCGCACGUGCGUCUACUUUGGCUCUUGAUUGCCGGAAUACUUAAAGACCGAGGUUCCAACCCCGAAACGCUCGU-UUCCCUCAUUC--- ((((((((-((((..((.(((.....(((((((((....))).....((((((........))))))))))))...))))).))))))))))))(((((....))-)))........--- ( -43.10) >DroSim_CAF1 59241 115 + 1 GGGGUUGG-GGCUAAUGAGUCGCUUGGAGUGUCGCACGUGCGUCUACUUUGGCUCUUGAUUGCCGGAAUACUUAAAGACCGAGGUUCCAACCCCGAAACGCUCGU-UUCACCCAUUC--- ((((((((-((((..((.(((.....(((((((((....))).....((((((........))))))))))))...))))).))))))))))))(((((....))-)))........--- ( -44.00) >DroEre_CAF1 63857 119 + 1 GGGGUUGG-GCCUAAUGAGUCGCUUGGAGUGUCGCACGUGCGUCUACUUUGGCUCUUGAUUGCCGGAAUACUUAAAGACCGAGGUCUCAACCCCGAAACUCUCUGCCCUGCCCAUCCCAC .((((.((-((....((((.(.(((((.(((.(((....))).).))((((((........))))))...........)))))).)))).....((.....)).)))).))))....... ( -38.50) >DroYak_CAF1 48165 113 + 1 GGGGUUGGGGGCUAAUGAGUCGCUUGGAGUGUCGCACGUGCGUCUACUUUGGCUCUUGAUUGCCGGAAUACUUAAAGACCGAGGUCUCAACCCCGAAUCUCCCUGCA----CCAUUC--- ((((((.((((....((((.(.(((((.(((.(((....))).).))((((((........))))))...........)))))).)))).)))).))))))......----......--- ( -38.30) >consensus GGGGUUGG_GGCUAAUGAGUCGCUUGGAGUGUCGCACGUGCGUCUACUUUGGCUCUUGAUUGCCGGAAUACUUAAAGACCGAGGUUCCAACCCCGAAACUCUCGU_UUCCCCCAUUC___ ((((((((.((((..((.(((.....(((((((((....))).....((((((........))))))))))))...))))).)))))))))))).......................... (-34.80 = -34.52 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:12 2006