Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,764,613 – 1,764,727 |
Length | 114 |
Max. P | 0.605342 |
Location | 1,764,613 – 1,764,727 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.15 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -23.02 |
Energy contribution | -24.34 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.23 |
Mean z-score | -1.67 |
Structure conservation index | 0.65 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1764613 114 - 22224390 GGCACACGGGCCGUGAUGCAGUUACUCCGCGAGGUUAUAGUCGACCCUCUUUCUGAGUUUUUUUUACGCGGAGAAUGAUUCAAAACCGAAACA-----CAUCGCUGCCCAUCGCCAGAA (((....((((.((((((......(((((((.((((......))))(((.....))).........)))))))..((.(((......))).))-----)))))).))))...))).... ( -40.90) >DroSec_CAF1 6094 113 - 1 GGCACACGGGCCGUGAUGCAGUGACUCCGCGAGGUAAUAAUCGACCACCUUUCUGAGUUAU-CCCACGCGGAGAAUCAUUCAAAACCGAAACA-----CAUCGCUGCCCACCGCCAGAA (((....((((.((((((......(((((((.((......(((..........))).....-.)).))))))).....(((......)))...-----)))))).))))...))).... ( -37.10) >DroSim_CAF1 6113 113 - 1 GGCACACGGGCCGUGAUGCAGUGACUCCGCGAGGUAAUAAUCGACCGCCUUUCUGAGUUAU-CCCACGCGGAGAAUGAUUCAAAACCGAAACA-----CAUCGCUGCCCACCGCCAGAA (((....((((.((((((......(((((((.((......(((..........))).....-.)).)))))))..((.(((......))).))-----)))))).))))...))).... ( -37.80) >DroEre_CAF1 5754 110 - 1 G--------GUCGUGAUGCACUGACUCCGCGGGAGAGUAAUGGACCUCCUUUUAGAGUUUU-CCCCCGUCAAGUAUAUUUCAAAACCGAAACAGAAACCAUCGCUGCCCAUCGGCAGAA .--------.((((((((..((((((..(((((.((((((.((....))..))).....))-).)))))..)))...((((......)))))))....))))))((((....)))))). ( -26.30) >DroYak_CAF1 5799 118 - 1 GGCACAUAGGCCGUGAUGCACUGACCCCGCGAGGAAAUAAUAGACCUCCUUUCAGGGUUUU-CCCCCGCGGAGCAUGUUUCGAAACCGAAACAGAAACCAUCUCUGCUCAUCGACAGAA (((......)))((((((....(((((.(.(((((...........))))).).)))))..-.....((((((..(((((((....)))))))........)))))).)))).)).... ( -34.40) >consensus GGCACACGGGCCGUGAUGCAGUGACUCCGCGAGGUAAUAAUCGACCUCCUUUCUGAGUUUU_CCCACGCGGAGAAUGAUUCAAAACCGAAACA_____CAUCGCUGCCCAUCGCCAGAA (((....((((.((((((......(((((((.((........(((((......)).)))....)).))))))).....(((......)))........)))))).))))...))).... (-23.02 = -24.34 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:54 2006