Locus 6339

Sequence ID X_DroMel_CAF1
Location 15,995,771 – 15,995,881
Length 110
Max. P 0.913391
window10345

overview

Window 5

Location 15,995,771 – 15,995,881
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.79
Mean single sequence MFE -27.32
Consensus MFE -24.10
Energy contribution -24.50
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.88
SVM decision value 1.09
SVM RNA-class probability 0.913391
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15995771 110 - 22224390
CAUUAAUAGCGAAGCAAUCAGGGCGUUGCAAAAGCGAGCGCUAAGAUCAUAACGAACGGUUUAAAU------AUAAUAUGUUAACUGGA----UUCAUAAUGCCCAGAGAUUGUCUUGAC
.........(((..(((((.((((((((....(((....)))...........((.(((((...((------(...)))...)))))..----.)).))))))))...)))))..))).. ( -25.10)
>DroSec_CAF1 63730 110 - 1
CAUUAAUAGCGAAGCAAUCAGGGCGUUGCAAAAGCGAGCGCUAAGAUCAUAACGAACGGUUUAAAU------AUAAUAUGUUAACUGGA----UUCAUAAUGCCCAGAGAUUGUCUUGCC
........((((..(((((.((((((((....(((....)))...........((.(((((...((------(...)))...)))))..----.)).))))))))...)))))..)))). ( -28.20)
>DroSim_CAF1 57920 110 - 1
CAUUAAUAGCGAAGCAAUCAGGGCGUUGCAAAAGCGAGCGCUAAGAUCAUAACGAACGGUUUAAAU------AUAAUAUGUUAACUGGA----UUCAUAAUGCCCAGAGAUUGUCUUGCC
........((((..(((((.((((((((....(((....)))...........((.(((((...((------(...)))...)))))..----.)).))))))))...)))))..)))). ( -28.20)
>DroEre_CAF1 62424 120 - 1
CAUUAAUAGCGAAGCAAUCAGGGCGUUGCAAAAGCGAGCGCUAAGAUCAUAACGAACGGUUUAAAUACGAGUAUAAUAUGUUAACUGGAUAUGUUCAUAAUGCACAGAGAUUGUCUUGCC
........((((..(((((..((((((((....)).))))))..((.((((.....(((((...(((.........)))...)))))..)))).))............)))))..)))). ( -26.90)
>DroYak_CAF1 46703 110 - 1
CAUUAAUAGCGAAGCAAUCAGGGCGUUGCAAAAGCGAGCGCUAAGAUCAUAACGAACGGUUUAAAU------AUAAUAUGUUAACUGGA----UUCAUAAUGCCCAGAGAUUGUCUUGCC
........((((..(((((.((((((((....(((....)))...........((.(((((...((------(...)))...)))))..----.)).))))))))...)))))..)))). ( -28.20)
>consensus
CAUUAAUAGCGAAGCAAUCAGGGCGUUGCAAAAGCGAGCGCUAAGAUCAUAACGAACGGUUUAAAU______AUAAUAUGUUAACUGGA____UUCAUAAUGCCCAGAGAUUGUCUUGCC
........((((..(((((.((((((((....(((....)))..............(((((.....................)))))..........))))))))...)))))..)))). (-24.10 = -24.50 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:10 2006