Locus 6337

Sequence ID X_DroMel_CAF1
Location 15,992,691 – 15,992,804
Length 113
Max. P 0.994343
window10337

overview

Window 7

Location 15,992,691 – 15,992,804
Length 113
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 76.85
Mean single sequence MFE -19.55
Consensus MFE -14.49
Energy contribution -14.60
Covariance contribution 0.11
Combinations/Pair 1.07
Mean z-score -2.21
Structure conservation index 0.74
SVM decision value 2.47
SVM RNA-class probability 0.994343
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15992691 113 - 22224390
AAAGCAUUCAGA-GUCGCUGGCACUGAGAAAAAUUCCAUUGCAGUGCAUAUAAUUGAAAUCUCUUACGCACACUAAACCUCAGUGUUAACAGCUGUUUCAAAAUCGAAUAAUUC
..........((-(..((((((((((((...(((...)))...((((.((..............)).)))).......))))))))...))))...)))............... ( -19.14)
>DroSec_CAF1 60628 97 - 1
AAAGCAUUCAGACGUCGCUGGCACUGAGAAAAAAUCCAUUUCAGUGCAUAAA-U---------UUAUAAAUAA-------CAUAAAUAACAGCUGUUUCAAAAUCAAUGAAUUC
.....((((((....)(((((((((((((.........)))))))))....(-(---------((((......-------.))))))..))))..............))))).. ( -19.10)
>DroSim_CAF1 51681 94 - 1
AAAGCAUUCAGA-GUCGUUGGCACUGAGAAAAAAUCCAUUUCAGUGCU--AA-U---------UUAUGCAUAA-------CAUAAAUAACAGCUGUUUCAAAAUCAAUAAAUUC
..(((.......-.....(((((((((((.........))))))))))--)(-(---------(((((.....-------)))))))....))).................... ( -20.40)
>consensus
AAAGCAUUCAGA_GUCGCUGGCACUGAGAAAAAAUCCAUUUCAGUGCAUAAA_U_________UUAUGCAUAA_______CAUAAAUAACAGCUGUUUCAAAAUCAAUAAAUUC
..(((...(((......)))(((((((((.........)))))))))............................................))).................... (-14.49 = -14.60 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:03 2006