Locus 6333

Sequence ID X_DroMel_CAF1
Location 15,991,322 – 15,991,423
Length 101
Max. P 0.778750
window10328

overview

Window 8

Location 15,991,322 – 15,991,423
Length 101
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 86.33
Mean single sequence MFE -39.80
Consensus MFE -30.56
Energy contribution -30.88
Covariance contribution 0.31
Combinations/Pair 1.10
Mean z-score -1.80
Structure conservation index 0.77
SVM decision value 0.55
SVM RNA-class probability 0.778750
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15991322 101 + 22224390
AAUGCGGUG---GUGGCAAUGUUGCGCUGUCAUGCGAAAGCAUUUCGCCUAGGUCGCUCUGUGCGUUGACAUUCGUGGUGCCCAGUGGAACAUCAAGCCAACCA------------
.....(((.---.((((.(((((.(((((..((((....))))..((((...(((((.....))...)))......))))..))))).)))))...))))))).------------ ( -33.70)
>DroSec_CAF1 59207 102 + 1
AAUGCGGUGGUGGUGGCAAUGUUGCGCUGUCAUGCGAAGGCAUUUCGCCUAGGUCGC--UGUGCGUUGACAUUCGCGGUGCCCAGUGCAACAUAAAGCCAGCCA------------
.......((((..((((.(((((((((((........((((.....)))).((.(((--((((.((....)).))))))))))))))))))))...))))))))------------ ( -40.60)
>DroSim_CAF1 50283 102 + 1
AAUGCGGUGGUGGUGGCAAUGUUGCGCUGUCAUGCGAAAGCAUUUCGUCUAGGUCGC--UGUGCGUUGACAUUCGCGGUGCCCAGUGCAACAUCAAGCCAGCCA------------
.......((((..((((.(((((((((((..((((....))))........((.(((--((((.((....)).))))))))))))))))))))...))))))))------------ ( -41.50)
>DroEre_CAF1 58084 111 + 1
AAUGCGGUG---GUGGCAAUGUUUCGCUGUCAUGCGAAAGCAUUUCGCCUAGGUAGC--UGUGCGUUGACAUUCGUCGUGCCCAGUGCAACGUCAAGCGAACCAGCCAGCCACCAA
.....((((---(((((((((((((((......))).))))))).......(((.((--(..((((((.((((.(......).))))))))))..)))..))).)))).))))).. ( -43.40)
>consensus
AAUGCGGUG___GUGGCAAUGUUGCGCUGUCAUGCGAAAGCAUUUCGCCUAGGUCGC__UGUGCGUUGACAUUCGCGGUGCCCAGUGCAACAUCAAGCCAACCA____________
.....(((.....((((.(((((((((((..((((....))))........((((((..(((......)))...)))..))))))))))))))...)))))))............. (-30.56 = -30.88 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:55 2006