| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,990,791 – 15,990,896 |
| Length | 105 |
| Max. P | 0.700515 |
| Location | 15,990,791 – 15,990,896 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.24 |
| Mean single sequence MFE | -29.02 |
| Consensus MFE | -8.97 |
| Energy contribution | -11.52 |
| Covariance contribution | 2.55 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15990791 105 - 22224390 AGGUCGUGUUGUGUGCGAAAG-UCCACUGGCAAUAACUGGUGAUAUGCACCGGUGUGACCGAGUUGAGCAAAUAUGCAACCGUGUGACCAUGCACCAAUAAAAAUA-------------- ......(((((.(((((...(-((((((((((...(((((((.....))))))).)).)))......(((....)))....))).)))..))))))))))......-------------- ( -32.80) >DroSec_CAF1 58696 105 - 1 AGGUCGUGUUGUGUGCGAAAG-UUCACUGCCAAUAACUGCUGAUAAGCACCGGUGUGACCGAGUUCGGCAACUAUGCAACCGUGGUACCAUGCACCGAUAAAAAUA-------------- .(((((((..(((.((....)-).)))((((......((((....)))).(((.....))).....))))((((((....))))))..)))).)))..........-------------- ( -30.50) >DroSim_CAF1 49772 105 - 1 AGGUCGUGUUGUGUACGAAAG-UUCACUGCCAAUAACUGGUGAUAAGCACCGGUGUGACCGAGUUCGACAAAUAUGCAACCGUGUGACCAUGCACCGAUAAAAAUA-------------- .(((.((((..(((.((((.(-.((((........(((((((.....))))))))))).)...)))))))...)))).)))((((......))))...........-------------- ( -28.00) >DroEre_CAF1 57640 86 - 1 AGGUCGGGUUGUGUGCGAAAG-UCCACUGCU------------------C-GGUGUGACCGAGUUCAGCAACUUGGCAACUGUAUGACCAUGCACCAAAAAAAAUA-------------- .((((((((.(((..(....)-..))).)))------------------)-(((.((.(((((((....))))))))))))....)))).................-------------- ( -29.00) >DroYak_CAF1 41796 110 - 1 AGUUCGGGUUGUGUGCGAAAGCUACACUGCUAAAAACUGGGAAUAUGCAC-CGGGUGACCGAGUUCUGCAAGCGGGAAAA---------AAAAACAAAAAAAAAUAAUAACUUACAAAUU ..(((((((.((((((....)).)))).))......((((.........)-)))....)))))(((((....)))))...---------............................... ( -24.80) >consensus AGGUCGUGUUGUGUGCGAAAG_UCCACUGCCAAUAACUGGUGAUAAGCACCGGUGUGACCGAGUUCAGCAAAUAUGCAACCGUGUGACCAUGCACCAAUAAAAAUA______________ .(((((.((.(((..(....)...))).)).....(((((((.....))))))).)))))............................................................ ( -8.97 = -11.52 + 2.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:55 2006