Locus 6326

Sequence ID X_DroMel_CAF1
Location 15,984,406 – 15,984,509
Length 103
Max. P 0.890215
window10311

overview

Window 1

Location 15,984,406 – 15,984,509
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.71
Mean single sequence MFE -40.56
Consensus MFE -34.42
Energy contribution -34.46
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.58
Structure conservation index 0.85
SVM decision value 0.96
SVM RNA-class probability 0.890215
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15984406 103 - 22224390
ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGA---CCCCCC--------------
((((.(((.((........)).))).))))((....))((((((((((((.((((((((....))))))).).))))))))(((((((....)))))---))))))-------------- ( -40.00)
>DroSec_CAF1 52329 106 - 1
ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGAACACCCCCC--------------
((((.(((.((........)).))).))))((....))((((((((((((.((((((((....))))))).).)))))))((.(((((....))))).))))))).-------------- ( -37.10)
>DroSim_CAF1 43064 103 - 1
ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUCGGUUAAGGAUAUUUGA---CCCCCC--------------
((((.(((.((........)).))).))))((....))((((((((((((.((((((((....))))))).).))))))))(((((((....)))))---))))))-------------- ( -42.50)
>DroEre_CAF1 51041 117 - 1
ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGA---CCUCCCCCUCCCACUCCCCA
..............(((....(((.((((.((....))((((((((((((.((((((((....))))))).).))))))..(((((((....)))))---)))))))).)))).)))))) ( -46.40)
>DroYak_CAF1 35014 103 - 1
ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAACGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGA---CCCCCC--------------
((((.(((.((........)).))).))))((....))(((((((.((((.((((((((....))))))).).)))).)))(((((((....)))))---))))))-------------- ( -36.80)
>consensus
ACUCUGUCGGACUUUGGAUUCGGAUUGGGUGCUUGUGCGGGGGAAAGGGAGCGCUCUAUGGACGUGGGGCAGGUCCUUUUUGGUUAAGGAUAUUUGA___CCCCCC______________
((((.(((.((........)).))).))))((....))((((((((((((.((((((((....))))))).).)))))))...(((((....)))))...)))))............... (-34.42 = -34.46 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:40 2006