Locus 6325

Sequence ID X_DroMel_CAF1
Location 15,984,237 – 15,984,346
Length 109
Max. P 0.771905
window10310

overview

Window 0

Location 15,984,237 – 15,984,346
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.63
Mean single sequence MFE -29.00
Consensus MFE -20.78
Energy contribution -20.62
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -2.72
Structure conservation index 0.72
SVM decision value 0.53
SVM RNA-class probability 0.771905
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15984237 109 - 22224390
UUGUGAGUGCCUAUCUUGUGGGCACAGCUC----CAUGUGCAACUUCUACAUGGGGAUACACACU-------CACGUAUUUACUUUCGCAUCCAAUAAACAAAAUGUGUCUACAAAUCCA
..((((((((((((...))))))))..(((----((((((.......)))))))))........)-------)))(((..(((......................)))..)))....... ( -28.35)
>DroSec_CAF1 52161 111 - 1
--GUGAGUGCCUAUCUUGUGGGCACAGCUCCAUCCAUGUGCAACUUCUACAUGGGGAUACACACU-------CACGUAUUUACUUUCGCAUCCAAUAAACAAAAUGUGUCUACAAAUCCA
--(((((((..(((((.((((((...)).))))(((((((.......))))))))))))..))))-------)))(((..(((......................)))..)))....... ( -28.75)
>DroSim_CAF1 42904 107 - 1
--GUGAGUGCCUAUCUUGUGGGCACAGCUC----CAUGUGCAACUUCUACAUGGGGAUACACACU-------CACGUAUUUACUUUCGCAUCCAAUAAACAAAAUGUGUCUACAAAUCCA
--((((((((((((...))))))))..(((----((((((.......)))))))))........)-------)))(((..(((......................)))..)))....... ( -28.35)
>DroEre_CAF1 50872 115 - 1
GUGCGAGUGCCUAUCUUGUGGGCACC-CUC----CAUGUGCAACUUCUACAUGGGGAUACACACUCACCAUUCACGUAUUUACUUUCGCAUCCAAUAAACAAAAUGUGUCUACAAAUCCA
((((((((((((((...)))))))).-(((----((((((.......))))))))).............................))))))............................. ( -28.60)
>DroYak_CAF1 34827 116 - 1
GUGUGAGUGCCUAUCUUGUGGGCACAGCUC----CAUGUGCAACUUCUACAUGGGGAUACACACUCACCACUCACGUAUUUACUUUCGCAUCCAAUAAACAAAAUGUGUCUACAAAUCCA
(((((.((((((((...))))))))..(((----((((((.......)))))))))...)))))...........(((..(((......................)))..)))....... ( -30.95)
>consensus
_UGUGAGUGCCUAUCUUGUGGGCACAGCUC____CAUGUGCAACUUCUACAUGGGGAUACACACU_______CACGUAUUUACUUUCGCAUCCAAUAAACAAAAUGUGUCUACAAAUCCA
..((((((((((((...)))))))).........((((((.......)))))).((((((...............))))))....))))............................... (-20.78 = -20.62 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:39 2006