Locus 6324

Sequence ID X_DroMel_CAF1
Location 15,982,838 – 15,982,958
Length 120
Max. P 0.998630
window10309

overview

Window 9

Location 15,982,838 – 15,982,958
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -46.70
Consensus MFE -46.70
Energy contribution -46.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.48
Structure conservation index 1.00
SVM decision value 3.17
SVM RNA-class probability 0.998630
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15982838 120 - 22224390
GCGCCAAGCGGCAAAAGCAGCAAAAGCGGCGGCGACGUGAUUUCAAACAGUGAAGUCGACUUGCCGCUGCCGCAUCGCAUCGCACCGCACAUUUACCGCAAUCGGUAAUCGGGAAUCGGU
(((....(((((.......((....))((((((((..((((((((.....))))))))..)))))))))))))..)))((((..(((.....((((((....)))))).)))....)))) ( -46.70)
>DroSec_CAF1 50730 120 - 1
GCGCCAAGCGGCAAAAGCAGCAAAAGCGGCGGCGACGUGAUUUCAAACAGUGAAGUCGACUUGCCGCUGCCGCAUCGCAUCGCACCGCACAUUUACCGCAAUCGGUAAUCGGGAAUCGGU
(((....(((((.......((....))((((((((..((((((((.....))))))))..)))))))))))))..)))((((..(((.....((((((....)))))).)))....)))) ( -46.70)
>DroSim_CAF1 41501 120 - 1
GCGCCAAGCGGCAAAAGCAGCAAAAGCGGCGGCGACGUGAUUUCAAACAGUGAAGUCGACUUGCCGCUGCCGCAUCGCAUCGCACCGCACAUUUACCGCAAUCGGUAAUCGGGAAUCGGU
(((....(((((.......((....))((((((((..((((((((.....))))))))..)))))))))))))..)))((((..(((.....((((((....)))))).)))....)))) ( -46.70)
>DroEre_CAF1 49450 120 - 1
GCGCCAAGCGGCAAAAGCAGCAAAAGCGGCGGCGACGUGAUUUCAAACAGUGAAGUCGACUUGCCGCUGCCGCAUCGCAUCGCACCGCACAUUUACCGCAAUCGGUAAUCGGGAAUCGGU
(((....(((((.......((....))((((((((..((((((((.....))))))))..)))))))))))))..)))((((..(((.....((((((....)))))).)))....)))) ( -46.70)
>DroYak_CAF1 33449 120 - 1
GCGCCAAGCGGCAAAAGCAGCAAAAGCGGCGGCGACGUGAUUUCAAACAGUGAAGUCGACUUGCCGCUGCCGCAUCGCAUCGCACCGCACAUUUACCGCAAUCGGUAAUCGGGAAUCGGU
(((....(((((.......((....))((((((((..((((((((.....))))))))..)))))))))))))..)))((((..(((.....((((((....)))))).)))....)))) ( -46.70)
>consensus
GCGCCAAGCGGCAAAAGCAGCAAAAGCGGCGGCGACGUGAUUUCAAACAGUGAAGUCGACUUGCCGCUGCCGCAUCGCAUCGCACCGCACAUUUACCGCAAUCGGUAAUCGGGAAUCGGU
(((....(((((.......((....))((((((((..((((((((.....))))))))..)))))))))))))..)))((((..(((.....((((((....)))))).)))....)))) (-46.70 = -46.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:38 2006