Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,982,100 – 15,982,241 |
Length | 141 |
Max. P | 0.999538 |
Location | 15,982,100 – 15,982,201 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 96.49 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -18.75 |
Energy contribution | -18.50 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.05 |
Mean z-score | -1.42 |
Structure conservation index | 1.01 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15982100 101 + 22224390 ---AAAAA--GCAGAAAAAAUAUAUCAAAGAGAAAAAGGAGCGCGUACAUGUGUAUAUGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGC ---.....--..........((((((...........((((((..(((....)))..)))..))).(((((.((.....)).))))).))))))............ ( -18.50) >DroSec_CAF1 49974 103 + 1 ---AAAAAAGUCAGAAAAAAUAUAUCAAAGAGAAAAAGGAGCGCGUGCAUGUGUAUAUGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGC ---.................((((((...........((((((..(((....)))..)))..))).(((((.((.....)).))))).))))))............ ( -18.50) >DroSim_CAF1 40743 103 + 1 ---AAAAAAGGCAGAAAAAAUAUAUCAAAGAGAAAAAGGAGCGCGUACAUGUGUAUAUGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGC ---.................((((((...........((((((..(((....)))..)))..))).(((((.((.....)).))))).))))))............ ( -18.50) >DroEre_CAF1 48680 106 + 1 GAAAAAAAAGGCAGAAAAAAUAUAUCAAAGAGAAAAAGGAGCGCGUGCAUGUGUAUAUGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGC ....................((((((...........((((((..(((....)))..)))..))).(((((.((.....)).))))).))))))............ ( -18.50) >consensus ___AAAAAAGGCAGAAAAAAUAUAUCAAAGAGAAAAAGGAGCGCGUACAUGUGUAUAUGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGC ....................((((((...........((((((..(((....)))..)))..))).(((((.((.....)).))))).))))))............ (-18.75 = -18.50 + -0.25)
Location | 15,982,127 – 15,982,241 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.39 |
Mean single sequence MFE | -33.13 |
Consensus MFE | -30.77 |
Energy contribution | -30.45 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.07 |
Mean z-score | -2.37 |
Structure conservation index | 0.93 |
SVM decision value | 3.70 |
SVM RNA-class probability | 0.999538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15982127 114 + 22224390 AAAAAGGAGCGCGUACAUGUGUAUA------UGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGCGCAACGCACUUUGUGUGUGUGCAAAAAGCAAGGAAGCCAA .....((.((((.((((((....))------))))(((((.((((.((.....)).))))))))).............)))).((((((.....))))))((.....)).......)).. ( -32.30) >DroSec_CAF1 50003 114 + 1 AAAAAGGAGCGCGUGCAUGUGUAUA------UGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGCGCAACGCACUUUGUGUGUGUGCAAAAAGCAAGGAAGCCAA .....((......(((...((((((------..(.(((((.((((.((.....)).))))))))).......(((((((((...))).)))))))..))))))....)))......)).. ( -32.50) >DroSim_CAF1 40772 114 + 1 AAAAAGGAGCGCGUACAUGUGUAUA------UGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGCGCAACGCACUUUGUGUGUGUGCAAAAAGCAAGGAAGCCAA .....((.((((.((((((....))------))))(((((.((((.((.....)).))))))))).............)))).((((((.....))))))((.....)).......)).. ( -32.30) >DroEre_CAF1 48712 114 + 1 AAAAAGGAGCGCGUGCAUGUGUAUA------UGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGCGCAACGCACUUUGUGUGUGUGCAAAAAACAAGGAAGCCAA .....((.((((.((((((....))------))))(((((.((((.((.....)).))))))))).............)))).((((((.....))))))................)).. ( -31.70) >DroYak_CAF1 32715 120 + 1 AAAAAGGAGCGCGUGCAUGUGUAUAUGUGUAUGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGCACAACGCACUUUGUGUGUGUGCAAAAAGCAAGGAAACCAA .....(((..((((((((((....))))))))))..))).(((((.((.....)).))))).(((.............(((((.(((((...)))))))))).............))).. ( -36.87) >consensus AAAAAGGAGCGCGUGCAUGUGUAUA______UGUAAUCCAAUCCAAGCAGUGGGCGUGGGUGGGUGUAAAAAACGAAGGCGCAACGCACUUUGUGUGUGUGCAAAAAGCAAGGAAGCCAA .....((...((((...(((((.............(((((.((((.((.....)).))))))))).............))))))))).((((((.((....))....))))))...)).. (-30.77 = -30.45 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:37 2006