Locus 6322

Sequence ID X_DroMel_CAF1
Location 15,981,506 – 15,981,623
Length 117
Max. P 0.659620
window10306

overview

Window 6

Location 15,981,506 – 15,981,623
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.77
Mean single sequence MFE -41.32
Consensus MFE -31.66
Energy contribution -32.26
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.10
Structure conservation index 0.77
SVM decision value 0.26
SVM RNA-class probability 0.659620
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15981506 117 - 22224390
UUGGCGCCCGCGAGUGCGAGCGAGAGCGAGAGAGCGACCGAUUGGCAAUAGCGA-GAGUGCAAAGUGCAUAAAAGUUUUUG-GCCAGCGAAAAAUGGCGACACAUCGGGUGG-GUCGCAA
...((((((((..((.(..((....))..)...))..(((((((.(((.(((..-..((((.....))))....))).)))-((((........))))..)).)))))))))-).))).. ( -41.30)
>DroSec_CAF1 49362 118 - 1
UUGGAGCCCGCGAGUGCGAGCGAGAGCGAGUGAGCGACCGAUUGGCAAUAGCGAAGAGUGCA-AGUGCAUAAAAGUUUUUGGGCCAGCGAA-AAUGGCGACACAUCGGGUGGGGUCGNNN
...((.((((((..(((..((....))..)))..)..(((((((.(((.(((.....((((.-...))))....))).))).((((.....-..))))..)).)))))))))).)).... ( -39.90)
>DroSim_CAF1 40144 117 - 1
UUGGCGCCCGCGAGUGCGAGCGAGAGCGAGUGAGCGACCGAUUGGCAAUAGCGA-GAGUGCAAAGUGCAUAAAAGUUUUUG-GCCAGCGAAAAAUGGCGACACAUCGGGUGG-GUCGCAA
...(((((((((..(((..((....))..)))..)..(((((((.(((.(((..-..((((.....))))....))).)))-((((........))))..)).)))))))))-).))).. ( -42.80)
>DroEre_CAF1 48079 117 - 1
UUGGCGACCGCGAGUGCGAGCGAGAGCGAGAGUGCGACCGAUUGGCAAUAGCGA-GAGUGCAAAGUGCAUAAAAGUUUUUG-GCCAGCGAAAAAUGGCGACACAUCGGGUGG-GUCGCAA
...((((((((..(..(..((....))....)..)..(((((((.(((.(((..-..((((.....))))....))).)))-((((........))))..)).))))))).)-))))).. ( -41.30)
>DroYak_CAF1 32055 117 - 1
UUGGCGCCCGCGAGUGCGAGCGAGAGCGAGAGAGCGACCGAUUGGCAAUAGCGA-GAGUGCAAAGUGCAUAAAAGUUUUUG-GCCAGCGAAAAAUGGCGACACAUCGGGUGG-GUCGCAA
...((((((((..((.(..((....))..)...))..(((((((.(((.(((..-..((((.....))))....))).)))-((((........))))..)).)))))))))-).))).. ( -41.30)
>consensus
UUGGCGCCCGCGAGUGCGAGCGAGAGCGAGAGAGCGACCGAUUGGCAAUAGCGA_GAGUGCAAAGUGCAUAAAAGUUUUUG_GCCAGCGAAAAAUGGCGACACAUCGGGUGG_GUCGCAA
...((((((((..((.(..((....))..)...))..(((((((.(((.(((.....((((.....))))....))).))).((((........))))..)).))))))))).).))).. (-31.66 = -32.26 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:36 2006