Locus 6321

Sequence ID X_DroMel_CAF1
Location 15,981,164 – 15,981,279
Length 115
Max. P 0.997639
window10305

overview

Window 5

Location 15,981,164 – 15,981,279
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.99
Mean single sequence MFE -26.64
Consensus MFE -23.02
Energy contribution -22.90
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -2.32
Structure conservation index 0.86
SVM decision value 2.90
SVM RNA-class probability 0.997639
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15981164 115 + 22224390
AUGGCAUAUUACGUUUUAUUCCGGCACUGAAUUUUGGUAUUGGUUUCGAUUUUUCACACUGAAGUGUUUGUCAUUUUGUACUAAAGUUCUUUUGGGUAU-UUUUGGUGUGCUAUAU----
(((((((((((........(((((....((((((((((((.(((..(((..((((.....))))...)))..)))..))))))))))))..)))))...-...)))))))))))..---- ( -28.04)
>DroSec_CAF1 49032 116 + 1
AUGGCAUAUUACGUUUUAUUCCGGCACUGAAUUUUGGUAUUGGUUUCGUUUUUUCACAUUGAAGUGUUUGUCAUUUUGUACUAAAGUUCUUUUGGGUAUAUUUUGGUGUGCUAUAU----
(((((((((((.....((((((((....((((((((((((.(((..((...((((.....))))....))..)))..))))))))))))..))))).)))...)))))))))))..---- ( -26.80)
>DroSim_CAF1 39803 116 + 1
AUGGCAUAUUACGUUUUAUUCCGGCACUGAAUUUUGGUAUUGGUUUCGUUUUUUCACAUCGAAGUGUUUGUCAUUUUGUACUAAAGUUCUUUUGGGUAUAUUUUGGUGUGCUAUAU----
(((((((((((.....((((((((....(((((((((((........((......))..(((((((.....))))))))))))))))))..))))).)))...)))))))))))..---- ( -27.40)
>DroEre_CAF1 47736 115 + 1
AUGACAUAUUAAGUUUUAUUCCGGCACUGAAUUUUGGUAUUGGUUUCGAUCUUUCUUAGCUAAGUGUUGGUCAUUUUGUACUGAAGUUCUUUUGCGUAU-UUUUGGUGUAUUAUAU----
((((.((((((((...(((....(((..((((((..(((((((((..((....))..)))))((((.....))))..))))..))))))...)))))).-.)))))))).))))..---- ( -21.30)
>DroYak_CAF1 31699 119 + 1
AUGGCAUAUUACGUUUUAUUCCGGCACUGAAUUUUGGUAUUGGUUUCGAUUUUGCAUAGCGAAGUGUUGGUCAUUUUGUACUAAAGUUCUUUUGGGUAU-UUUUGGUGUGCUAUAUAUCA
(((((((((((........(((((....((((((((((((((..(...(((((((...)))))))...)..))....))))))))))))..)))))...-...)))))))))))...... ( -29.64)
>consensus
AUGGCAUAUUACGUUUUAUUCCGGCACUGAAUUUUGGUAUUGGUUUCGAUUUUUCACAGCGAAGUGUUUGUCAUUUUGUACUAAAGUUCUUUUGGGUAU_UUUUGGUGUGCUAUAU____
(((((((((((........(((((....(((((((((((........(......)....(((((((.....))))))))))))))))))..))))).......)))))))))))...... (-23.02 = -22.90 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:35 2006