| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,980,316 – 15,980,415 |
| Length | 99 |
| Max. P | 0.871284 |
| Location | 15,980,316 – 15,980,415 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 69.39 |
| Mean single sequence MFE | -21.37 |
| Consensus MFE | -11.89 |
| Energy contribution | -12.33 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15980316 99 - 22224390 GAAAAUAUUGCGUGCAG--------------AUUGUUUUUUUUU--AUUUGAAAUGAUAAGAGCAUUGAUUUGAACUUAUCAAAAACAGGUUGAAAGAUAACACGUUAGUACGCA ........(((((((.(--------------((((((.((((((--(((((...(((((((..((......))..)))))))....)))).))))))).)))).))).))))))) ( -26.40) >DroSec_CAF1 48223 101 - 1 GAAAAUAUGGCGUGCAG--------------AUGGUGUUUUUCAUUACAAAUAAUGAUAAGAGCUUUGAUUUGAACUUAUCAACAACAGCUUCAAAGAUAACACAUUAGUACGCA .........((((((.(--------------(((.((((((((((((....))))))...((((((((((........)))))....)))))..))))))...)))).)))))). ( -24.40) >DroYak_CAF1 30927 106 - 1 G------UUGCCUGCAGAAAUAAAUUGACUAAAUGUGUUUUUCAU---UAAAAAUUAUAGGAGCUUUGAUUUGAACUUAUCAAUGGUUGGAUUAAUAAUAACACGUUAGUACGCA .------.(((.((((....)..........((((((((.((.((---(((.((((((..(((.(((.....))))))....))))))...))))))).)))))))).))).))) ( -13.30) >consensus GAAAAUAUUGCGUGCAG______________AUUGUGUUUUUCAU_A_UAAAAAUGAUAAGAGCUUUGAUUUGAACUUAUCAAAAACAGGUUCAAAGAUAACACGUUAGUACGCA .........((((((.......................................(((((((..(........)..)))))))................(((....))))))))). (-11.89 = -12.33 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:34 2006