Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,761,545 – 1,761,665 |
Length | 120 |
Max. P | 0.637781 |
Location | 1,761,545 – 1,761,665 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.00 |
Mean single sequence MFE | -37.99 |
Consensus MFE | -22.26 |
Energy contribution | -21.52 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.52 |
Mean z-score | -1.61 |
Structure conservation index | 0.59 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.637781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1761545 120 + 22224390 AAUCACUCGGAUGUUGGCCACAUAUUGCUGCUGCAGUUCGUACAGCUGCCAAAGGGUCCUCAUUCGAGACUCAUACUCUUUCUGGGCGCCUGUGCCCAAUACACUACUCAUAUUAGUAUC .....((((((((..((((.......((((.(((.....)))))))........))))..))))))))..............((((((....))))))....((((.......))))... ( -35.56) >DroVir_CAF1 3114 120 + 1 GAUUAGUCGUAUGUUGACCGCAUACUGUUGUUCCAGCUCGAAGAGCUGCCACAGCGAGCGCAUCCGGCUCUCGUACUCCUUUUGGGCGGCAACGCCCAGCACGCUGCUAAUGUUGCCAUC .((((((.(..((((.......(((.(((((..((((((...))))))..)))))(((.((.....)).))))))........(((((....)))))))))..).))))))......... ( -43.20) >DroEre_CAF1 2695 120 + 1 AAUCAGUCGGAUGUUAGCCACAUAUUGCUGCUCCAGUUCGUACAGCUGCCAAAGGGACCUCAUUCGAGACUCAUACUCUUUCUGGGCACCAGUGCCCAGUACACUACUCAUAUUACCAUC ......(((((((....((.......((((..(......)..))))........))....)))))))..............(((((((....)))))))..................... ( -28.26) >DroYak_CAF1 2724 120 + 1 UAUCAGUUGGAUAUUGGCCGCAUAUUGCUGCUCCAGUUCGUACAGCUGCCAAAGGGAUCUCAUUCGAGACUCAUACUCUUUCUGGGCACCUAUGCCCAGUACACUAGUCAUAUUAGUAUC ...((((((...(((((..(((......))).))))).....)))))).....(((.((((....))))))).........(((((((....)))))))...((((((...))))))... ( -33.40) >DroMoj_CAF1 2560 120 + 1 AAUCAGUCGCACAUUUACCGCAAACUGUUGCUCCAGCUCGAAGAGCUGCCACAGCGAGCGCAUCCGGCUCUCGUACUCCUUUUGGGCGGCAACGCCCAGGACGCUGCUGAUGUUGCCAUC .((((((.((.........((((....))))..((((((...))))))((...(((((.((.....)).)))))........((((((....))))))))..)).))))))......... ( -45.00) >DroAna_CAF1 2823 120 + 1 GAUCAGCCGGAUAUUGGCCGCGUACUGCUGCUCCAGCUCGUACAGUUGCCACAGGGAUCGCAUCCGGGACUCGUACUCCUUCUGGGCACUGGUGCCCAGGACGUUGGUAAUGUUGCCGUC ......((((((..((((.((((((.((((...))))..)))).)).))))..(......)))))))(((.........(((((((((....)))))))))....((((....))))))) ( -42.50) >consensus AAUCAGUCGGAUAUUGGCCGCAUACUGCUGCUCCAGCUCGUACAGCUGCCAAAGGGACCGCAUCCGAGACUCAUACUCCUUCUGGGCACCAAUGCCCAGUACACUACUCAUAUUACCAUC ......((((((...(((.((.....)).))).(((((.....))))).............))))))..............(((((((....)))))))..................... (-22.26 = -21.52 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:52 2006