Locus 6318

Sequence ID X_DroMel_CAF1
Location 15,978,485 – 15,978,599
Length 114
Max. P 0.547341
window10302

overview

Window 2

Location 15,978,485 – 15,978,599
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.45
Mean single sequence MFE -30.38
Consensus MFE -26.50
Energy contribution -27.24
Covariance contribution 0.75
Combinations/Pair 1.17
Mean z-score -1.37
Structure conservation index 0.87
SVM decision value 0.03
SVM RNA-class probability 0.547341
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15978485 114 - 22224390
UGUUGGGCA------AAUAAAUACAUAUUUUUGUUCAGUGUCAUUGGAAAAGGUAGUCAAGAGACAAAGACCGAAUGACAGGUACACCUCCUCCCACUCCGCCUUUCCCGCUCCCAACAC
(((((((..------((((((........))))))..........((.((((((.(((....))).......((.((..(((.......)))..)).)).)))))).))...))))))). ( -25.30)
>DroSec_CAF1 46278 114 - 1
UGUUGGGCA------AAUACACACAUAUUUUUGCUCAGUGUCAUUGGGUAAGGCAGUCAAGAGACAAAGACCGAAUGACAGGUACGCCUCCUCCCACUCCGCCUUUCCCGCUCCCAACAC
(((((((..------.....((((.............))))....(((.(((((.(((....))).......((.((..(((.......)))..)).)).))))).)))...))))))). ( -30.72)
>DroEre_CAF1 45053 118 - 1
UGUUGGACAUAGGUCAAUAAAUACUCAUUUUU-CUCAGUGUUGUUGGGGAAGGCAGUCAAGAGACACAGACCGAAUGACAGGCACACCUCCUCCCACUCCCCCU-UCCCGCUUCCAACAC
(((((((.......((((((.((((.......-...))))))))))(((((((..(((....))).......((.((..(((.......)))..)).))..)))-))))...))))))). ( -30.40)
>DroYak_CAF1 28998 113 - 1
UGUUGGGCA------AAGAAAUACGGAUUUUU-CUCAGUGUUAUUGGGGAAGGCAGUCAAGAGACAAAGACCGAAUGACAGGCACACCUCCGCCCACUCCGCCUCUCCCGCUCCCAGCAA
(((((((..------....(((((.((.....-.)).)))))...(((..((((.((((...(........)...)))).(((........)))......))))..)))...))))))). ( -35.10)
>consensus
UGUUGGGCA______AAUAAAUACAUAUUUUU_CUCAGUGUCAUUGGGGAAGGCAGUCAAGAGACAAAGACCGAAUGACAGGCACACCUCCUCCCACUCCGCCUUUCCCGCUCCCAACAC
(((((((............(((((.............)))))...(((((((((.((((...(........)...))))(((....)))...........)))))))))...))))))). (-26.50 = -27.24 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:32 2006