Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,978,289 – 15,978,390 |
Length | 101 |
Max. P | 0.862260 |
Location | 15,978,289 – 15,978,390 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 84.42 |
Mean single sequence MFE | -44.48 |
Consensus MFE | -28.06 |
Energy contribution | -27.62 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -2.43 |
Structure conservation index | 0.63 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15978289 101 + 22224390 CGGAUCGGCCAUUCGGAUCGGUCUU--ACCAGGCUGGUGUUAGAGCU------------GGAGCUGGAGGAGGCACUGAGCCAUAGGCCUCCGUCUCCAUCUCCAUCUCCAUCCG .(((((((((....)).))))))).--....((.(((.(...(((.(------------((((.((((((.(((.....))).....)))))).))))).)))...).))).)). ( -42.00) >DroSec_CAF1 46080 97 + 1 CGGAUCGGCCAUUCGGAUCGGUCUUGCACCAGGCUGGUGUUAGAGCU------------GGAGCUGGA---GGCACUGAGCCAUAGGCCUCC---UCCGUCUCCAUCUCCAUCCC .(((((((((....)).))))))).(((((.....)))))..(((.(------------((((.((((---((....(.(((...)))).))---)))).))))).)))...... ( -38.80) >DroEre_CAF1 44855 108 + 1 CGGAUCGGCCAUUCGGAUCGGUCUU--ACCAAGCUGCAGUUAGAGCUGCACCUGGAGCUGGAGCUGGA---GGCACUGAGCCAUAGGCCUUCGCCUCCGUCUCCAUCUCCAUC-- .(((((((((....)).))))))).--....((.((((((....)))))).))((((.(((((.((((---(((...(.(((...))))...))))))).))))).))))...-- ( -50.10) >DroYak_CAF1 28808 108 + 1 CGGAUCGGCCAUUCGGAUCGGUCUU--ACCAAGCUGGAGUUGGAGCUGCACCUGGAGCUGGAGCUGGA---GGCACUGAGCCAUAGGCCUCCGUCUCCGUCUCCAUCUCCAUC-- .(((((((((....)).))))))).--.......(((((.(((((((.(....).))).((((.((((---(((.(((.....)))))))))).))))...)))).)))))..-- ( -47.00) >consensus CGGAUCGGCCAUUCGGAUCGGUCUU__ACCAAGCUGGAGUUAGAGCU____________GGAGCUGGA___GGCACUGAGCCAUAGGCCUCCGUCUCCGUCUCCAUCUCCAUC__ .(((((((((....)).))))))).......((((........))))............((((.((((...((....(((((...)).))).....))...)))).))))..... (-28.06 = -27.62 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:31 2006