Locus 6316

Sequence ID X_DroMel_CAF1
Location 15,977,648 – 15,977,759
Length 111
Max. P 0.705984
window10300

overview

Window 0

Location 15,977,648 – 15,977,759
Length 111
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.65
Mean single sequence MFE -41.90
Consensus MFE -32.46
Energy contribution -32.27
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -2.66
Structure conservation index 0.77
SVM decision value 0.36
SVM RNA-class probability 0.705984
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15977648 111 + 22224390
CUGUUGCCG---CCGCCUUUGCAAUCUUAUUUUAUUUUAUGCCACCGCGGGCAAGGGAUCAUCGAGUCGCAUCCAUGCAUUCCUUGGUGUUUUCAAAGGUGGA------GGCAGGCACAA
.(((((((.---((((((((...................((((......)))).(..(.(((((((..(((....)))....))))))).)..))))))))).------)))).)))... ( -37.50)
>DroSec_CAF1 45468 113 + 1
CUGUUGCCGCCGCCGCCUUUGCAAUCUUAUUUUAUUUUAUGCCACCGCGGGCAAGGGAUCAUCGAGUCGCAUCCAUGCAUUC-UUGGUGUUUUCAAAGGUGGA------GGCAGGCACAA
.(((.((((((.((((((((...................((((......)))).(..(.(((((((..(((....)))...)-)))))).)..))))))))).------))).)))))). ( -43.60)
>DroEre_CAF1 44284 117 + 1
CUGUUGCCG---CCGCCUUUGCAAUCUUAUUUUAUUUUAUGCCACCGCGGGCAAGGGAUCAUCGAGUCGCAUCCAUGCAUUCCUUGGUGUUUCCAAAGGUGGAGGCGGAGGCAGGCACAA
.(((((((.---(((((((..(.................((((......)))).((((.(((((((..(((....)))....))))))).))))....)..))))))).)))).)))... ( -46.60)
>DroYak_CAF1 28167 110 + 1
CUGUUGCCG---CCGCCUUUGCAAUCUUAUUUUAUUUUAUGCCACCGCGGGCAAGGGAUCAUCGAGUCGCAUCCAUGCAUUC-UUGGUGUCUUCAAAGGUGGA------GGCAGGCACAA
.(((((((.---(((((((((..................((((......)))).((((.(((((((..(((....)))...)-))))))))))))))))))).------)))).)))... ( -39.90)
>consensus
CUGUUGCCG___CCGCCUUUGCAAUCUUAUUUUAUUUUAUGCCACCGCGGGCAAGGGAUCAUCGAGUCGCAUCCAUGCAUUC_UUGGUGUUUUCAAAGGUGGA______GGCAGGCACAA
.(((((((....(((((((((..................((((......))))(((.((((..((((.(((....)))))))..)))).))).))))))))).......)))).)))... (-32.46 = -32.27 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:30 2006