Locus 6314

Sequence ID X_DroMel_CAF1
Location 15,976,620 – 15,976,735
Length 115
Max. P 0.991922
window10296

overview

Window 6

Location 15,976,620 – 15,976,735
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.08
Mean single sequence MFE -31.92
Consensus MFE -29.52
Energy contribution -29.52
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.92
SVM decision value 2.30
SVM RNA-class probability 0.991922
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15976620 115 + 22224390
ACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCACCUGACACAUAAGCUCCAAGUUGUCGUCUUCAUCUGCGC--CUUUUUGCCGCACAAAACCCAAA---GAGA
..(((....(((((((.(((.....))).)))))))((((.((.(((((..(((.((...(((.....)))...))..)))..)))))--..)).)))))))...........---.... ( -30.40)
>DroSec_CAF1 44409 114 + 1
ACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCACCUGACACAUAAGCUCCAAGUUGUCGUCUUCAUCUGCGC--CUUUUUGCCGCAAA-AGCCCAAA---GAGA
..(((....(((((((.(((.....))).)))))))((((.((.(((((..(((.((...(((.....)))...))..)))..)))))--..)).)))))))..-........---.... ( -30.70)
>DroSim_CAF1 35557 115 + 1
ACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCACCUGACACAUAAGCUCCAAGUUGUCGUCUUCAUCUGCGC--CUUUUUGCCGCAAAAAACCCAAA---GAGA
..(((....(((((((.(((.....))).)))))))((((.((.(((((..(((.((...(((.....)))...))..)))..)))))--..)).)))))))...........---.... ( -30.70)
>DroEre_CAF1 43290 116 + 1
ACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCACCUGACACAUAAGCUCCAAGUUGUCGUCUUCAUCUGCGC--CUUUUUGCCGCACA-AACCCAAC-CCGAGA
..(((....(((((((.(((.....))).)))))))((((.((.(((((..(((.((...(((.....)))...))..)))..)))))--..)).)))))))..-........-...... ( -30.40)
>DroYak_CAF1 27165 119 + 1
ACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCACCUGACACAUAAGCUCCAAGUUGUCGUCUUCAUCUGCGCGUCUUUUUGCCGCACA-AACCCAAAGAGGAGA
..(((....(((((((.(((.....))).)))))))((((.((((((((..(((.((...(((.....)))...))..)))..))))))))....)))))))..-...((.....))... ( -37.40)
>consensus
ACUGCAAAAGCGAGUGCAAUAAAUUGUUACAUUCGCGGCACGACGCGCACCUGACACAUAAGCUCCAAGUUGUCGUCUUCAUCUGCGC__CUUUUUGCCGCACA_AACCCAAA___GAGA
..(((....(((((((.(((.....))).)))))))((((.((.(((((..(((.((...(((.....)))...))..)))..)))))....)).))))))).................. (-29.52 = -29.52 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:26 2006