Locus 6312

Sequence ID X_DroMel_CAF1
Location 15,975,341 – 15,975,451
Length 110
Max. P 0.516356
window10292

overview

Window 2

Location 15,975,341 – 15,975,451
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.90
Mean single sequence MFE -34.76
Consensus MFE -21.44
Energy contribution -23.08
Covariance contribution 1.64
Combinations/Pair 1.03
Mean z-score -1.95
Structure conservation index 0.62
SVM decision value -0.03
SVM RNA-class probability 0.516356
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15975341 110 + 22224390
GG-------GGGCGGGCAUUUC---CGAUCCUAUAAAGUACCGCUGCAUGGCAACAUGGCCACAAAAGGGUCCUUUGUACUGUUAAAAGGGCUCAUUGUAUUCGUGUACACGGGGUACAA
((-------(..((((....))---))..))).....(((((....((((....)))).((......(((((((((.........)))))))))..(((((....))))).))))))).. ( -38.70)
>DroSec_CAF1 43177 96 + 1
GG--------G--GGGCAUUUC---CGACCCUAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAGGGCUCAUUGUACUCGU-----------ACAA
((--------(--.((.....)---)..)))......((((...((((((((......)))......(((((((((.........))))))))).)))))...))-----------)).. ( -28.90)
>DroSim_CAF1 34339 97 + 1
GG-------GG--GGGCAUUUC---CGACCCUAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAGGGCUCAUUGUACUCGU-----------ACAA
((-------(.--.((.....)---)..)))......((((...((((((((......)))......(((((((((.........))))))))).)))))...))-----------)).. ( -30.60)
>DroEre_CAF1 42039 105 + 1
AU--------G--GGGCAUUUC---CGACCCUAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAGGGCUCAUUGUAGUCGUG--CAUGGGGUACAA
((--------(--((((.....---.).))))))...((((((((((...)))))(((((.((((..(((((((((.........))))))))).)))).))))).--.....))))).. ( -37.60)
>DroYak_CAF1 25895 115 + 1
AGGGGGAAGGG--GGGCAUUUCCUUCGACCCCAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAG-UCUCAUUGUACUCGUG--CAUGGGGUACAA
..((((..(((--(((....))))))..)))).....(((((.(((((.(((......)))...((((....))))(((((((......-....)))))))...))--)).).))))).. ( -38.00)
>consensus
GG_______GG__GGGCAUUUC___CGACCCUAUAAAGUACCGUUGCAAGGCAACAUGGCCACAAAAGGGUCCUUUGUGCAGUUAAAAGGGCUCAUUGUACUCGUG__CA_GGGGUACAA
.............((((.........).)))......((((((((((...)))))((((..((((..(((((((((.........))))))))).))))..))))........))))).. (-21.44 = -23.08 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:22 2006