Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,973,506 – 15,973,624 |
Length | 118 |
Max. P | 0.683451 |
Location | 15,973,506 – 15,973,624 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -23.86 |
Consensus MFE | -18.90 |
Energy contribution | -18.42 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.17 |
Mean z-score | -1.66 |
Structure conservation index | 0.79 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15973506 118 - 22224390 G-AGGAAGAUUGACAGGGCAAUAAAGAAAUUAUUGGAUUAUAAGCUACACAAACUUUAAGAAGAGAUAAUC-CCGAAAAUGAAACCAAAAUGUUAGCUCUUUAAUAUAUUGCCCUAACUG .-............(((((((((...........(((((((...((.(...........).))..))))))-).................((((((....)))))))))))))))..... ( -20.20) >DroSec_CAF1 41339 119 - 1 GAAGGAAGAUUGACAGGGCAAUAAAGAAAUUAUUGGAUUAUAAGCUUCACAAACCUUAAGAGGAGAUAAUCUCCGAAAUCGAA-ACAACAUGUCAGCUCUUUAAUAUAUUGCCCUAACUG ..............(((((((((((....)).....((((..((((..(((..........((((.....))))(....)...-......))).))))...)))).)))))))))..... ( -23.00) >DroSim_CAF1 32557 118 - 1 GAAGGAAGAUUGACGGGGCAAUAAAGAAAUUAUUGGAUUAUAAGCUUCACAAACCUUAAGAGGAGAUAAUC-CCGAAAACGAA-ACAAAAUGUCAGCUUCUUAAUAUAUUGCCCUAACUG ..............((((((((((((((......(((((((...((((...........))))..))))))-)((....))..-.............)))))....)))))))))..... ( -24.90) >DroEre_CAF1 40243 117 - 1 -CGGGAAGUUUGACGGGGCAAUAAAGAACUUAUUGGAUUAUAAGCUUCACAAAUGUUGAGAAGAGAUAAUC-CCAAAGACGAA-AUAAAAUGCCAGCUCUUUGAAAUAUGGCCCUAACUG -.....((((....(((((.(((...........(((((((...((((.((.....)).))))..))))))-)(((((((...-...........).))))))...))).))))))))). ( -25.94) >DroYak_CAF1 24065 108 - 1 ----------UGGCAGGGCAAUGAAGAAAUUAUUGGAUUAUAAGCUUCACAAAUGUUAAGAAGAGAUAAUC-CCAAAGACGAA-ACAAAAUGCCAGCUCUUUAAAAUAUUGCCCUAACUG ----------.(..(((((((((...........(((((((...((((...........))))..))))))-).((((((...-...........).)))))....)))))))))..).. ( -25.24) >consensus G_AGGAAGAUUGACAGGGCAAUAAAGAAAUUAUUGGAUUAUAAGCUUCACAAACCUUAAGAAGAGAUAAUC_CCGAAAACGAA_ACAAAAUGUCAGCUCUUUAAUAUAUUGCCCUAACUG ..............(((((((((((....)).(((((((((...((((...........))))..)))))..))))..............................)))))))))..... (-18.90 = -18.42 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:18 2006