Locus 631

Sequence ID X_DroMel_CAF1
Location 1,754,692 – 1,754,793
Length 101
Max. P 0.592682
window1019

overview

Window 9

Location 1,754,692 – 1,754,793
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 91.58
Mean single sequence MFE -17.08
Consensus MFE -12.98
Energy contribution -13.26
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.64
Structure conservation index 0.76
SVM decision value 0.12
SVM RNA-class probability 0.592682
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1754692 101 + 22224390
UUACCCUGUAUUCUGCAGACAACCCACAAAGGGAAUAUCAGAAACAAAUGACAAAAGCAAAUACUUUAUGUCAAAUUUGCCAAAUUUGUCAAAAACAAGCA
......(((.(((((.......(((.....))).....))))))))..(((((((.((((((((.....))...))))))....))))))).......... ( -18.10)
>DroSec_CAF1 17904 101 + 1
UUACCCUGUAUACUGCAAGCAGCCCACAAAGGGAGCAUCAGAAACAAAUGGCAUAAGCAAAUACUUUAUGUCACAUUUGCCAAAUUUGUCAAAAACAAGCA
...((((.....(((....))).......)))).((........(((((((((((((.......)))))))..))))))......((((.....)))))). ( -18.40)
>DroSim_CAF1 17113 101 + 1
UUACCCUGUAUACUGCAAGCAGCCCACAAAGGGAGCAUCAGAAACAAAUGGCAUAAGCAAAUACUUUAUGUCACAUUUGCCAAAUUUGUCAAAAACAAGCA
...((((.....(((....))).......)))).((........(((((((((((((.......)))))))..))))))......((((.....)))))). ( -18.40)
>DroEre_CAF1 17946 101 + 1
UUACCCUAUAUACUGCAGAGAGCUAACAAAGGGAGCAUCAAAAACAAAUGGUAAAAGCAAAUACUUUAUGUCACAUUUGCCAAAUUUGUCAAAAACAAGCA
...((((.......((.....))......)))).((............(((((((.(((.........)))....)))))))...((((.....)))))). ( -14.32)
>DroYak_CAF1 13899 101 + 1
UUACCCUAUAUACCGCAGAGAGCUAACGAAGGGAGCAUCACAAACAAAUGGCAAAAGCAAAUACUUUAUGUCACAUUUGCCAAAUUUGUCAAAAACAAGCA
..............((...(((((..(....).))).)).........(((((((.((((((((.....))...))))))....))))))).......)). ( -16.20)
>consensus
UUACCCUGUAUACUGCAGACAGCCCACAAAGGGAGCAUCAGAAACAAAUGGCAAAAGCAAAUACUUUAUGUCACAUUUGCCAAAUUUGUCAAAAACAAGCA
...((((.......((.....))......))))...............(((((((.((((((((.....))...))))))....))))))).......... (-12.98 = -13.26 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:51 2006