Locus 6307

Sequence ID	X_DroMel_CAF1
Location	15,971,152 – 15,971,272
Length	120
Max. P	0.999785

overview

Window 2

Location	15,971,152 – 15,971,272
Length	120
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	99.33
Mean single sequence MFE	-42.74
Consensus MFE	-41.28
Energy contribution	-41.32
Covariance contribution	0.04
Combinations/Pair	1.03
Mean z-score	-2.10
Structure conservation index	0.97
SVM decision value	2.52
SVM RNA-class probability	0.994856
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15971152 120 + 22224390
GGACUCGCAGUUGAGCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCUUUACCGAUUGCUAGUCGGCAGGUAGCUGCCGACUCC
((((.((((((((.(((.((..(((((((((......)))))))))...)).........))).)))).)))).))))((((......))))....(((((((((....))))))))).. ( -44.00)
>DroSec_CAF1 39048 120 + 1
GGACUCGGAGUUGAGCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGACCCAACUUGCGCGUUCAUCGCUUUACCGAUUGCUAGUCGGCAGGUAGCUGCCGACUCC
(((.((((.((((.(((.((..(((((((((......)))))))))...))....))).)))).........(((.....)))....))))......((((((((....))))))))))) ( -42.80)
>DroSim_CAF1 30213 120 + 1
GGACUCGGAGUUGAGCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCUUUACCGAUUGCUAGUCGGCAGGUAGCUGCCGACUCC
(((.((((.((((.(((.((..(((((((((......)))))))))...))....))).)))).........(((.....)))....))))......((((((((....))))))))))) ( -42.30)
>DroEre_CAF1 37943 120 + 1
GGACUCGGAGUUGAGCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCUUUACCGAUUGCUAGUCGGCAGGUAGCUGCCGACUCC
(((.((((.((((.(((.((..(((((((((......)))))))))...))....))).)))).........(((.....)))....))))......((((((((....))))))))))) ( -42.30)
>DroYak_CAF1 21895 120 + 1
GGACUCGGAGUUGAGCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCUUUACCGAUUGCUAGUCGGCAGGUAGCUGCCGACUCC
(((.((((.((((.(((.((..(((((((((......)))))))))...))....))).)))).........(((.....)))....))))......((((((((....))))))))))) ( -42.30)
>consensus
GGACUCGGAGUUGAGCCUGUAAAAAGCAAUUCACUGUAAUUGCUUUGUGACUUAUGGCCCGGCCCAACUUGCGCGUUCAUCGCUUUACCGAUUGCUAGUCGGCAGGUAGCUGCCGACUCC
(((.((((.((((.(((.((..(((((((((......)))))))))...))....))).)))).........(((.....)))....))))......((((((((....))))))))))) (-41.28 = -41.32 +   0.04)

alignment

secondary structure

dotplot

Window 3

Location	15,971,152 – 15,971,272
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	99.33
Mean single sequence MFE	-46.90
Consensus MFE	-45.94
Energy contribution	-45.98
Covariance contribution	0.04
Combinations/Pair	1.03
Mean z-score	-3.43
Structure conservation index	0.98
SVM decision value	4.07
SVM RNA-class probability	0.999785
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15971152 120 - 22224390
GGAGUCGGCAGCUACCUGCCGACUAGCAAUCGGUAAAGCGAUGAACGCGCAAGUUGGGCCGGGCCAUAAGUCACAAAGCAAUUACAGUGAAUUGCUUUUUACAGGCUCAACUGCGAGUCC
..(((((((((....)))))))))....((((......))))((...((((.((((((((.(((.....)))..(((((((((......))))))))).....))))))))))))..)). ( -48.00)
>DroSec_CAF1 39048 120 - 1
GGAGUCGGCAGCUACCUGCCGACUAGCAAUCGGUAAAGCGAUGAACGCGCAAGUUGGGUCGGGCCAUAAGUCACAAAGCAAUUACAGUGAAUUGCUUUUUACAGGCUCAACUCCGAGUCC
(((((((((((....))))))))......((((....(((.....)))...(((((((((.(((.....)))..(((((((((......))))))))).....))))))))))))).))) ( -44.60)
>DroSim_CAF1 30213 120 - 1
GGAGUCGGCAGCUACCUGCCGACUAGCAAUCGGUAAAGCGAUGAACGCGCAAGUUGGGCCGGGCCAUAAGUCACAAAGCAAUUACAGUGAAUUGCUUUUUACAGGCUCAACUCCGAGUCC
(((((((((((....))))))))......((((....(((.....)))...(((((((((.(((.....)))..(((((((((......))))))))).....))))))))))))).))) ( -47.30)
>DroEre_CAF1 37943 120 - 1
GGAGUCGGCAGCUACCUGCCGACUAGCAAUCGGUAAAGCGAUGAACGCGCAAGUUGGGCCGGGCCAUAAGUCACAAAGCAAUUACAGUGAAUUGCUUUUUACAGGCUCAACUCCGAGUCC
(((((((((((....))))))))......((((....(((.....)))...(((((((((.(((.....)))..(((((((((......))))))))).....))))))))))))).))) ( -47.30)
>DroYak_CAF1 21895 120 - 1
GGAGUCGGCAGCUACCUGCCGACUAGCAAUCGGUAAAGCGAUGAACGCGCAAGUUGGGCCGGGCCAUAAGUCACAAAGCAAUUACAGUGAAUUGCUUUUUACAGGCUCAACUCCGAGUCC
(((((((((((....))))))))......((((....(((.....)))...(((((((((.(((.....)))..(((((((((......))))))))).....))))))))))))).))) ( -47.30)
>consensus
GGAGUCGGCAGCUACCUGCCGACUAGCAAUCGGUAAAGCGAUGAACGCGCAAGUUGGGCCGGGCCAUAAGUCACAAAGCAAUUACAGUGAAUUGCUUUUUACAGGCUCAACUCCGAGUCC
(((((((((((....))))))))......((((....(((.....)))...(((((((((.(((.....)))..(((((((((......))))))))).....))))))))))))).))) (-45.94 = -45.98 +   0.04)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:14 2006