Locus 6306

Sequence ID X_DroMel_CAF1
Location 15,970,384 – 15,970,483
Length 99
Max. P 0.951610
window10281

overview

Window 1

Location 15,970,384 – 15,970,483
Length 99
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 79.80
Mean single sequence MFE -18.93
Consensus MFE -11.87
Energy contribution -12.69
Covariance contribution 0.81
Combinations/Pair 1.06
Mean z-score -2.35
Structure conservation index 0.63
SVM decision value 1.41
SVM RNA-class probability 0.951610
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15970384 99 - 22224390
UAAGAUGUUACCGAUUAAAGGAUGGAUACUAACCCACCGAAUGCCCCCAGUGUCCACCCACCGAGCAC-------------ACCACACCAAACGGUAACCAAAAUAAAAAAC
......(((((((......((.((((((((..................)))))))).))...(.....-------------..)........)))))))............. ( -19.47)
>DroSec_CAF1 38293 88 - 1
UAAGAUGUUACCGAUUAAAGGAUGGAUACUAACCCAC----------CAGUGUCCACCCACCGAGCAC-------------ACCACACCAAACGGAAACCAAAAAG-AAUAC
......(((.(((......((.((((((((.......----------.)))))))).))...(.....-------------..)........))).))).......-..... ( -16.40)
>DroSim_CAF1 29456 88 - 1
UAAGAUGUUACCGAUUAAAGGAUGGAUACUAACCCAC----------CAGUGUCCACCCACCGAGCAC-------------AGCACACCAAACGGAAACCAAAAUG-AAUAC
......(((.(((......((.((((((((.......----------.)))))))).)).....((..-------------.))........))).))).......-..... ( -18.40)
>DroEre_CAF1 37249 108 - 1
CAAGAUGUUGCCGAUUAAAGGAGGGAUACUAACCCACCCAACGC---CAGUGUCCACCCACCGAGCACUGAACCACACCACAGCUCACCCAAUGGAAUCCAAAACG-AAAAU
.....((((...((((...((..(((((((..............---.)))))))..))...((((..((........))..)))).........))))...))))-..... ( -21.46)
>consensus
UAAGAUGUUACCGAUUAAAGGAUGGAUACUAACCCAC__________CAGUGUCCACCCACCGAGCAC_____________ACCACACCAAACGGAAACCAAAAUG_AAAAC
......(((.(((......((.((((((((..................)))))))).)).....((................))........))).)))............. (-11.87 = -12.69 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:12 2006