Locus 6301

Sequence ID X_DroMel_CAF1
Location 15,965,850 – 15,965,955
Length 105
Max. P 0.598792
window10269

overview

Window 9

Location 15,965,850 – 15,965,955
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.23
Mean single sequence MFE -33.30
Consensus MFE -22.86
Energy contribution -22.86
Covariance contribution -0.00
Combinations/Pair 1.14
Mean z-score -2.01
Structure conservation index 0.69
SVM decision value 0.13
SVM RNA-class probability 0.598792
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15965850 105 - 22224390
AUUAUUUUGAUUUAUACCGUGUUGUCAUUCCGCUGACAAAGUCAAGUCGUUUGCCGCCGAGCUUCUUCAGUUCGUCGGUGUUCGCUU-----U----------GGCACGGAUCAACUGCU
......(((((.....((((.((((((......)))))).((((((.((..(((((.((((((.....)))))).)))))..)).))-----)----------))))))))))))..... ( -33.90)
>DroSec_CAF1 34034 103 - 1
AUUAUUGUGAUUUAUACCGUGUUGUCAUUCCGCUGACAAAGUCAAGUCGUUUGCCGCCGAGCUUCUUCAGUUCGUCGG--UUCGCUU-----U----------GGCACGGAUCAACUGCU
................((((.((((((......)))))).((((((.((...((((.((((((.....)))))).)))--).)).))-----)----------))))))).......... ( -31.60)
>DroSim_CAF1 25079 103 - 1
AUUAUUGUGAUUUAUACCGUGUUGUCAUUCCGCUGACAAAGUCAAGUCGUUUGCCGCCGAGCUUCUUCAGUUCGUCGG--UUCGCUU-----U----------GGCACGGAUCAACUGCU
................((((.((((((......)))))).((((((.((...((((.((((((.....)))))).)))--).)).))-----)----------))))))).......... ( -31.60)
>DroEre_CAF1 33080 108 - 1
AUUAUUGUGAUUUAUACCGGGUUGUCAUUCCGCUGACAAAGUCAAGUCGUUCGCCGCCGAGCUUCUUCAGCUCGUUGG--UUCGCUU-----UG-----GCUUGGCACGAAUCAACUGCU
.......((((((........((((((......)))))).(((((((((...((((.((((((.....)))))).)))--)......-----))-----)))))))..))))))...... ( -34.10)
>DroYak_CAF1 16165 118 - 1
AUUAUUGUGAUUUAUACCGUGUUGUCAUUUGGCUGACAAAGUCAAGUCGUUUGCCGAGGAGCUUCUUCAGUUUGUGGG--UUCGGUUCGGUUUGGUUUGGCACGGCACGGAUCAACUGCU
.......(((((..(.((((.((((((......)))))).(((((..((...(((((((((((((........).)))--)))..)))))).))..))))))))).)..)))))...... ( -35.30)
>consensus
AUUAUUGUGAUUUAUACCGUGUUGUCAUUCCGCUGACAAAGUCAAGUCGUUUGCCGCCGAGCUUCUUCAGUUCGUCGG__UUCGCUU_____U__________GGCACGGAUCAACUGCU
.......(((((..(.(((..((((((......))))))...)(((.((....(((.((((((.....)))))).)))....)))))................)).)..)))))...... (-22.86 = -22.86 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:01 2006