Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,751,262 – 1,751,368 |
Length | 106 |
Max. P | 0.530140 |
Location | 1,751,262 – 1,751,368 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -40.83 |
Consensus MFE | -30.70 |
Energy contribution | -30.57 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.26 |
Mean z-score | -1.23 |
Structure conservation index | 0.75 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1751262 106 - 22224390 UUGGCCCUCUGUCCGGCCAAUCACGCCCCGUUGCGGGAGCACGGGGCCAUCCACCAUCUGGUGCGACUGCUUAUGCGCGCCUUCCAAGACACAGAGAGGGUGAGU--------------U ((((((........))))))....(((((((.((....)))))))))..((((((....)))).))..((....)).((((((((........).)))))))...--------------. ( -43.70) >DroVir_CAF1 17437 106 - 1 CUGGCCCUCUGUCCGGCCAAUCAUGCGCCGCUGCGUGAGCACGGCGCCAUACACCAUCUGGUGCGUCUCCUGAUGCGUGCAUUCCAGGAUACAGAACGCGUAAGU--------------A .(((((........))))).....((((((.(((....)))))))))....((((....)))).((.((((((((....)))..))))).)).....((....))--------------. ( -42.40) >DroGri_CAF1 18258 105 - 1 CUGGCCCUCUGUCCGGCCAAUCAUGCACCGUUGCGCGAACACGGCGCAAUCCACCAUCUGGUGCGGCUCCUGAUGCGUGCAUUCCAGGACACAGAACGCGUAAGU--------------- .(((((........)))))...((((.(((((((((.......))))))..((((....))))))).((((((((....)))..)))))........))))....--------------- ( -34.10) >DroWil_CAF1 20563 106 - 1 CUGGCUCUCUGUCCGGCCAAUCAUGCACCAUUGCGUGAGCAUGGAGCUAUACAUCACUUGGUGCGUCUGUUAAUGCGCGCCUUCCAGGACACAGAAAGGGUGAGU--------------C ((.(((((.(((((((........((.((((.((....)))))).))............(((((((........)))))))..)).))))).....))))).)).--------------. ( -36.80) >DroYak_CAF1 10407 120 - 1 UUGGCUCUCUGUCCGGCCAAUCACGCCCCGUUGCGGGAGCACGGGGCCAUCCACCAUCUGGUGCGGCUGCUAAUGCGCGCCUUCCAAGACACAGAGAGGGUGAGUACUAACUUAACUACU ....((((((((..((((......(((((((.((....)))))))))....((((....)))).))))((....))..............))))))))(((((((....)))).)))... ( -46.30) >DroMoj_CAF1 17575 106 - 1 CUGGCCCUCUGCCCGGCCAAUCAUGCGCCGUUGCGGGAGCACGGCGCCAUCCAUCAUCUGGUGCGUCUGCUGAUGCGCGCAUUCCAGGACACAGAGCGUGUAAGU--------------A .(((((........))))).....(((((((.((....))))))))).........((((((((((..((....)))))))..)))))((((.....))))....--------------. ( -41.70) >consensus CUGGCCCUCUGUCCGGCCAAUCAUGCACCGUUGCGGGAGCACGGCGCCAUCCACCAUCUGGUGCGUCUGCUGAUGCGCGCAUUCCAGGACACAGAAAGGGUAAGU______________A .(((((........))))).((..((((((.(((....))))))))).........(((((.(((..(((....))))))...))))).....))......................... (-30.70 = -30.57 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:50 2006