Locus 6296

Sequence ID X_DroMel_CAF1
Location 15,961,825 – 15,961,944
Length 119
Max. P 0.889497
window10261

overview

Window 1

Location 15,961,825 – 15,961,944
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.33
Mean single sequence MFE -32.62
Consensus MFE -23.36
Energy contribution -23.80
Covariance contribution 0.44
Combinations/Pair 1.16
Mean z-score -2.26
Structure conservation index 0.72
SVM decision value 0.96
SVM RNA-class probability 0.889497
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15961825 119 + 22224390
CUACUGGAUCUAUUGGGGUUUUCGAUGUGUAGCAUCUGCAUUUAUACGUCUUCUUU-UUUAUUCAAGAAAGGGGAGCGUUUAAGUGGAAGAAUCAGUGAUUUUCAGUUUAUGUUAGCGAA
..((((((..((((((..(((((((((.....))))..((((((.(((((((((((-(((....))))))))))).))).))))))))))).))))))...))))))............. ( -33.90)
>DroSec_CAF1 29990 120 + 1
CUACUGGAUCUAUUGGGGUUUUCGGAGUGUAGCAUCUGCUUUUAUACGUCUUCUUUUUUUAUUCAAGAAAGGGGAGCGUUUAACUGGAAGAAUCAGUGAUUUUCAGUUUAUGUUAGCGAA
..((((((..((((((..(((((((.....(((....))).(((.(((.(((((((((((.....)))))))))))))).))))))))))..))))))...))))))............. ( -30.40)
>DroEre_CAF1 28621 118 + 1
CUACUGGAUCUAUUGGGGUUUUCUGA-GGCAGCAUCUGCUUUUAUACCUUUUUUUG-UUUUGUAAAGAAAUGAGAGCGUUUAAGUGGAAGGACCAGUGGUUUUCAGUUAAAGUUAGCGAA
..((((((.(((((((..(((((.((-(((((...)))))))........((((..-((((.....))))..)))).........)))))..)))))))..))))))............. ( -28.20)
>DroYak_CAF1 12200 119 + 1
CUACUGGAUCUAUUGGGGUUUUCUGACUGCAGCAUCUGCUUUUAAACGCUCUUUUU-UUUAUUUAAGAAUUGAGAGCGUUUAAGUGGAAGAAUCAGUGGUUUUCAGUUCAAUUUAGCGAA
..((((((.(((((((..((((((.(((((((...))))...(((((((((((..(-(((.....))))..)))))))))))))))))))).)))))))..))))))............. ( -38.00)
>consensus
CUACUGGAUCUAUUGGGGUUUUCGGAGUGCAGCAUCUGCUUUUAUACGUCUUCUUU_UUUAUUCAAGAAAGGAGAGCGUUUAAGUGGAAGAAUCAGUGAUUUUCAGUUUAAGUUAGCGAA
..((((((..((((((..(((((.....((((...))))..(((.(((((((((((.(((....))).))))))))))).)))..)))))..))))))...))))))............. (-23.36 = -23.80 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:54 2006