| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,960,350 – 15,960,462 |
| Length | 112 |
| Max. P | 0.728065 |
| Location | 15,960,350 – 15,960,462 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.92 |
| Mean single sequence MFE | -26.13 |
| Consensus MFE | -22.88 |
| Energy contribution | -23.12 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15960350 112 - 22224390 UUUGGCUUUA-ACAUCGGCUUUGACAGAGAAGGCAACUUGCCAAACAUAUCUCAUGUGCGGCAAGCCGUGUUGACACUUUUAAUGUGUUUCAUAAAUAAAUUUUUACAAAAU-------A ((((.....(-(((.((((((........(((....)))(((..((((.....))))..)))))))))))))(((((.......))))).................))))..-------. ( -26.60) >DroSec_CAF1 28494 111 - 1 U-UGGCUCUA-ACAUCUGCUCUGACGGAGAAGGCAACUUGCCAAACAUAUCUCAUGUGCGGCAAGCCGUGUUGACACUUUUAAUGUGUUUCAUAAAUAAAUUUUUACAAAAU-------A .-.((((...-...((((......)))).(((....)))(((..((((.....))))..))).))))(((..(((((.......))))).)))...................-------. ( -23.60) >DroEre_CAF1 27202 110 - 1 --UGGCUUUA-ACAUCGGCUUUGACAGAGAAGGCAACUUGCCAAACAUAUCUCAUGUGCGGCAAGCCGUGUUGACACUUUUAAUGUGUUUCAUAAAUACAUUUUUACAAAAU-------A --.((..(((-(((.((((((........(((....)))(((..((((.....))))..)))))))))))))))..))...((((((((.....))))))))..........-------. ( -27.80) >DroYak_CAF1 10807 118 - 1 --UGGCUUUAAACAGCGGCUUUGACAGAGAAGGCAACUUGCCAAACAUAUCUCAUGUGCGGCAAGCCGUGUUGACACUUUUAAUGUGUUUCAUAAAUAAAUUUUUACAAAAUAGUGUAUA --........((((.((((((........(((....)))(((..((((.....))))..))))))))))))).(((((.....((((.................))))....)))))... ( -26.53) >consensus __UGGCUUUA_ACAUCGGCUUUGACAGAGAAGGCAACUUGCCAAACAUAUCUCAUGUGCGGCAAGCCGUGUUGACACUUUUAAUGUGUUUCAUAAAUAAAUUUUUACAAAAU_______A ...(((...........(((((.......)))))...(((((..((((.....))))..))))))))(((..(((((.......))))).)))........................... (-22.88 = -23.12 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:53 2006