Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,959,848 – 15,959,968 |
Length | 120 |
Max. P | 0.953447 |
Location | 15,959,848 – 15,959,968 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.36 |
Mean single sequence MFE | -35.52 |
Consensus MFE | -32.94 |
Energy contribution | -33.70 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.71 |
Structure conservation index | 0.93 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15959848 120 - 22224390 GCUCGCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUCGCCAGAGCUUCAUAA ((.(((......)))))((((((((((((((((........))))))))......))))))))....((((((((......((((((((....)))))))).......)))))))).... ( -36.52) >DroSec_CAF1 28001 120 - 1 GCUCGCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUCGCAAGAGCUUCAUAA ((.(((......)))))((((((((((((((((........))))))))......))))))))....((((((((......((((((((....)))))))).......)))))))).... ( -36.52) >DroEre_CAF1 26724 120 - 1 GCUCGCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUUGCAAGAGCUUCAUAA ((.(((......)))))((((((((((((((((........))))))))......))))))))....((((((((((....((((((((....))))))))...))..)))))))).... ( -36.60) >DroYak_CAF1 10325 116 - 1 ----GCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUCGCCAGAGCUUCAUAA ----((.((...)).))((((((((((((((((........))))))))......))))))))....((((((((......((((((((....)))))))).......)))))))).... ( -32.42) >consensus GCUCGCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUCGCAAGAGCUUCAUAA ((.(((......)))))((((((((((((((((........))))))))......))))))))....((((((((......((((((((....)))))))).......)))))))).... (-32.94 = -33.70 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:52 2006