Locus 6293

Sequence ID X_DroMel_CAF1
Location 15,957,829 – 15,957,949
Length 120
Max. P 0.730980
window10258

overview

Window 8

Location 15,957,829 – 15,957,949
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.23
Mean single sequence MFE -19.23
Consensus MFE -18.30
Energy contribution -18.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.95
SVM decision value 0.42
SVM RNA-class probability 0.730980
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15957829 120 + 22224390
CCAUCAUACAAUCGGACCUCCCAGACACCACACAUCAUCCACAAGCAGCCACACCGUGCAUACACGAGUACAGAUGAUUAUUGAAAAUAAAAAUAAGAAUAAUGAUGUGACAAAUUCUGA
.............((....))((((.....((((((((..............((((((....)))).))....((..(((((.........)))))..)).))))))))......)))). ( -18.30)
>DroSec_CAF1 26099 120 + 1
CCAUCAUACCAUCGGACCUCCCAGACACCACACAUCAUCCACAAGCAACCACACCGUGCAUACACGAGUACAGAUGAUUAUUGAAAAUAAAAAUAAGAAUAAUGAUGUGACAAAUUCUGA
.............((....))((((.....((((((((..............((((((....)))).))....((..(((((.........)))))..)).))))))))......)))). ( -18.30)
>DroEre_CAF1 24838 116 + 1
CCGUCAUACCAGCGGACCUCCCAGACACCACACAUCAUCCACAA----CCACACCGUGCAUACACGAGUACAGAUGAUUAUUGAAAAUAAAAAUAAGAAUAAUGAUGUGACAAAUUCUGA
((((.......))))......((((.....((((((((......----....((((((....)))).))....((..(((((.........)))))..)).))))))))......)))). ( -21.00)
>DroYak_CAF1 8321 116 + 1
CCGUCAUACCAUCGGACCUCCCAGACACCACACAUCAUCCACAA----CCACACCGUGCAUACACGAGUACAGAUGAUUAUUGAAAAUAAAAAUAAGAAUAAUGAUGUGACAAAUUCUGA
(((.........)))......((((.....((((((((......----....((((((....)))).))....((..(((((.........)))))..)).))))))))......)))). ( -19.30)
>consensus
CCAUCAUACCAUCGGACCUCCCAGACACCACACAUCAUCCACAA____CCACACCGUGCAUACACGAGUACAGAUGAUUAUUGAAAAUAAAAAUAAGAAUAAUGAUGUGACAAAUUCUGA
.............((....))((((.....((((((((..............((((((....)))).))....((..(((((.........)))))..)).))))))))......)))). (-18.30 = -18.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:51 2006