Locus 6292

Sequence ID X_DroMel_CAF1
Location 15,956,596 – 15,956,704
Length 108
Max. P 0.949824
window10257

overview

Window 7

Location 15,956,596 – 15,956,704
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.35
Mean single sequence MFE -27.25
Consensus MFE -24.78
Energy contribution -25.18
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.91
SVM decision value 1.40
SVM RNA-class probability 0.949824
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15956596 108 - 22224390
CGACGCAUCCCAUCCAUCC------GCACUCGCAUUCGCAUUCGCAUCCGCAUC------CACAUCCGCAUCCGCUGCCCCUGGCGCUACCGUUGCGCCAUCCACUCGCCCUGAAUGCAA
....((.............------))....((((((((....))....((...------.......(((.....)))...((((((.......)))))).......))...)))))).. ( -24.52)
>DroSec_CAF1 24927 108 - 1
CGACGCACCCCAUCCAUCC------GCACUCGCAUUCGCAUUCGCAUCCGCAUC------CACAUCCGCAUCCGCUGCCCCUGGCGCUACCGUUGCGCCAUCCACUCGCCCUGAAUGCGA
....((.............------))..((((((((((....))....((...------.......(((.....)))...((((((.......)))))).......))...)))))))) ( -26.92)
>DroSim_CAF1 18383 108 - 1
CGACGCACCCCAUCCAUCC------GCACUCGCAUUCGCAUUCGCAUCCGCAUC------CACAUCCGCAUCCGCUGCCCCUGGCGCUACCGUUGCGCCAUCCACUCGCCCUGAAUGCGA
....((.............------))..((((((((((....))....((...------.......(((.....)))...((((((.......)))))).......))...)))))))) ( -26.92)
>DroEre_CAF1 23622 120 - 1
CGACGCACCCCAUCCACCAGCACCAGCACUCGCAUCCGCAUUCGCAUUCGCAUCUGCAUCCGCAUCCGCAUCCGCUGCCACUGGCGCUGCCCUUGCGCCAUCCCCUCGCCCUGAAUGCGA
...................((....))....((....))..((((((((((....))....((....(((.....)))...((((((.......)))))).......))...)))))))) ( -29.70)
>DroYak_CAF1 7057 114 - 1
CGACGCAUCCCAUCCACCC------GCACUCGCAUUCGCAUUCGCAUCCGCAUCCACAUACGCAUCCGCAUCCGCUGCCUCUGGCGCUACCGCUGCGCCAUCCCCUCGCCCUGAAUGCGA
...................------((....))..((((((((((....))..........((....(((.....)))...((((((.......)))))).......))...)))))))) ( -28.20)
>consensus
CGACGCACCCCAUCCAUCC______GCACUCGCAUUCGCAUUCGCAUCCGCAUC______CACAUCCGCAUCCGCUGCCCCUGGCGCUACCGUUGCGCCAUCCACUCGCCCUGAAUGCGA
.............................((((((((((....))....((................(((.....)))...((((((.......)))))).......))...)))))))) (-24.78 = -25.18 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:50 2006