Locus 6291

Sequence ID X_DroMel_CAF1
Location 15,956,436 – 15,956,556
Length 120
Max. P 0.617495
window10256

overview

Window 6

Location 15,956,436 – 15,956,556
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 99.44
Mean single sequence MFE -41.70
Consensus MFE -41.72
Energy contribution -41.50
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.44
Structure conservation index 1.00
SVM decision value 0.17
SVM RNA-class probability 0.617495
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15956436 120 - 22224390
CGUCCAGCAGACAUCGUCGCACGCACAAUCGUCGGCGCAAUCGAUGAGCGUUCACUUCUCGCAGCUGGCCCAUGCCCAGCUGCAUUUGCAGAAUCAAUUGCAACAGAAGCUAUCGGCGGC
.(((.....)))...(((((((((....(((((((.....)))))))))))...(((((.((((((((.......))))))))..((((((......)))))).)))))......))))) ( -41.70)
>DroSec_CAF1 24767 120 - 1
CGUCCAGCAGACAUCGUCGCACGCACAAUCGUCGGCGCAAUCGAUGAGCGUUCACUUCUCGCAGCUGGCCCAUGCCCAGCUGCAUUUGCAGAAUCAAUUGCAGCAGAAGCUAUCGGCGGC
.(((.....)))...(((((((((....(((((((.....)))))))))))...((((((((((((((.......))))))))...(((((......)))))).)))))......))))) ( -41.70)
>DroYak_CAF1 6897 120 - 1
CGUCCAGCAGACAUCGUCGCACGCACAAUCGUCGGCGCAAUCGAUGAGCGUUCACUUCUCGCAGCUGGCCCAUGCCCAGCUGCAUUUGCAGAAUCAAUUGCAGCAGAAGCUAUCGGCGGC
.(((.....)))...(((((((((....(((((((.....)))))))))))...((((((((((((((.......))))))))...(((((......)))))).)))))......))))) ( -41.70)
>consensus
CGUCCAGCAGACAUCGUCGCACGCACAAUCGUCGGCGCAAUCGAUGAGCGUUCACUUCUCGCAGCUGGCCCAUGCCCAGCUGCAUUUGCAGAAUCAAUUGCAGCAGAAGCUAUCGGCGGC
.(((.....)))...(((((((((....(((((((.....)))))))))))...(((((.((((((((.......))))))))..((((((......)))))).)))))......))))) (-41.72 = -41.50 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:49 2006