Locus 6290

Sequence ID X_DroMel_CAF1
Location 15,956,196 – 15,956,316
Length 120
Max. P 0.931058
window10255

overview

Window 5

Location 15,956,196 – 15,956,316
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -49.02
Consensus MFE -47.79
Energy contribution -47.48
Covariance contribution -0.31
Combinations/Pair 1.08
Mean z-score -2.09
Structure conservation index 0.97
SVM decision value 1.21
SVM RNA-class probability 0.931058
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15956196 120 - 22224390
GAGUGAUUUGCAGAACAUGCAACCGUUUGACUUUCGGAAAAUCAGCUCGGCAGCGGCGCUGGGUGCCUUCGGUGGUCCCUUGCCGUUGCCGCAAAGUCCCACGGAAUUCGGACAACACCA
(.(((..(((((.....)))))..((((((.(((((...........(((((((((((..(((.(((......)))))).)))))))))))..........))))).))))))..)))). ( -47.60)
>DroSec_CAF1 24533 120 - 1
GAGUGAUUUGCAGAACAUGCAACCGUUUGACUUUCGGAAAAUCAGCUCGGCGGCGGCGCUGGGUGCCUUUGGUGGUCCCUUGCCGCUGCCGCAAAGUCCCACGGAAUUCGGACAACACCA
(.(((..(((((.....)))))..((((((.(((((...........(((((((((((..(((.(((......)))))).)))))))))))..........))))).))))))..)))). ( -49.30)
>DroEre_CAF1 23246 120 - 1
GAGUGAUUUGCAGAACAUGCAACCGUUUGACUUUCGGAAAAUCAGCUCGGCGGCGGCGCUGGGCGCAUUUGGUGGUCCCUUGCCGCUGCCGCAGAGUCCCACGGAGUUCGGACAACACCA
(.(((..(((((.....)))))..((((((.(((((.........(((((((((((((..((((.(((...)))))))..))))))))))).)).......))))).))))))..)))). ( -48.29)
>DroYak_CAF1 6663 120 - 1
GAGUGAUUUGCAGAACAUGCAACCGUUUGACUUUCGGAAAAUCAGCUCGGCGGCGGCGCUGGGUGCCUUUGGUGGUCCCUUGCCGCUGCCGCAGAGUCCCACGGAAUUCGGACAACACCA
(.(((..(((((.....)))))..((((((.(((((.........(((((((((((((..(((.(((......)))))).))))))))))).)).......))))).))))))..)))). ( -50.89)
>consensus
GAGUGAUUUGCAGAACAUGCAACCGUUUGACUUUCGGAAAAUCAGCUCGGCGGCGGCGCUGGGUGCCUUUGGUGGUCCCUUGCCGCUGCCGCAAAGUCCCACGGAAUUCGGACAACACCA
(.(((..(((((.....)))))..((((((.(((((...........(((((((((((..(((.(((......)))))).)))))))))))..........))))).))))))..)))). (-47.79 = -47.48 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:48 2006