Locus 6288

Sequence ID X_DroMel_CAF1
Location 15,954,570 – 15,954,671
Length 101
Max. P 0.918171
window10252

overview

Window 2

Location 15,954,570 – 15,954,671
Length 101
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 99.50
Mean single sequence MFE -36.00
Consensus MFE -36.00
Energy contribution -36.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.63
Structure conservation index 1.00
SVM decision value 1.12
SVM RNA-class probability 0.918171
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15954570 101 - 22224390
UGCCCUCGCCCAAAUGGCGGCCAAUAAACGGAAACGCAAGAGCCAGAAUCCAGUCCGAUGUCCUGUGCAAUCGGAUGAGAAUUCGGGCGAGAAUUCAAUCG
....(((((((...((((..((.......))...(....).))))(((((..(((((((((.....)).)))))))..).))))))))))).......... ( -36.00)
>DroSec_CAF1 22933 101 - 1
UGCCCUCGCCCAAAUGGCGGCCAAUAAACGGAAACGCAAGAGCCAGAAUCCAGUCCGAUGUCCUGUGCAAUCGGAUGAGAAUUCGGGCGAGAAUUCAAUCG
....(((((((...((((..((.......))...(....).))))(((((..(((((((((.....)).)))))))..).))))))))))).......... ( -36.00)
>DroEre_CAF1 21597 101 - 1
CGCCCUCGCCCAAAUGGCGGCCAAUAAACGGAAACGCAAGAGCCAGAAUCCAGUCCGAUGUCCUGUGCAAUCGGAUGAGAAUUCGGGCGAGAAUUCAAUCG
....(((((((...((((..((.......))...(....).))))(((((..(((((((((.....)).)))))))..).))))))))))).......... ( -36.00)
>DroYak_CAF1 5007 101 - 1
UGCCCUCGCCCAAAUGGCGGCCAAUAAACGGAAACGCAAGAGCCAGAAUCCAGUCCGAUGUCCUGUGCAAUCGGAUGAGAAUUCGGGCGAGAAUUCAAUCG
....(((((((...((((..((.......))...(....).))))(((((..(((((((((.....)).)))))))..).))))))))))).......... ( -36.00)
>consensus
UGCCCUCGCCCAAAUGGCGGCCAAUAAACGGAAACGCAAGAGCCAGAAUCCAGUCCGAUGUCCUGUGCAAUCGGAUGAGAAUUCGGGCGAGAAUUCAAUCG
....(((((((...((((..((.......))...(....).))))(((((..(((((((((.....)).)))))))..).))))))))))).......... (-36.00 = -36.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:46 2006