Locus 6286

Sequence ID X_DroMel_CAF1
Location 15,953,266 – 15,953,386
Length 120
Max. P 0.861911
window10242

overview

Window 2

Location 15,953,266 – 15,953,386
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.33
Mean single sequence MFE -48.72
Consensus MFE -43.98
Energy contribution -44.22
Covariance contribution 0.24
Combinations/Pair 1.11
Mean z-score -1.36
Structure conservation index 0.90
SVM decision value 0.83
SVM RNA-class probability 0.861911
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15953266 120 - 22224390
CACGCUGGUUAUCCACUGAUCGCCGGCGAUGGCUCGCCACCAAGUCCCCGCCUAUUUUUGAAUCACGGUGGCGGCGCGAGUCCGCUUCUGUUUGCCGGACUGCCGCGCAUGCCGAGAUUC
..(((((((.(((....))).))))))).((((.(((((((.........................)))))))((((((((((((........).))))))..)))))..))))...... ( -49.51)
>DroSec_CAF1 21622 120 - 1
CACGCUAGUUAUCCGCUGAUCGCCGGCGAUGGCUCGCCACCAAGUCCCCGCCUAUUUUUGAGCCACGGUGGCGGCGCGAGUCCGCUUCUGUUUGCCGGACUGCCGCGCAUGCCGAGAUUC
..(((..((.(((....))).))..))).((((.(((((((..(....)(((.......).))...)))))))((((((((((((........).))))))..)))))..))))...... ( -45.00)
>DroSim_CAF1 16143 120 - 1
CACGCUGGUUAUCCGCUGAUCGCCGGCGAUGGCUCGCCACCAAGUCCCCGCCUAUUUUUGAGCCACGGCGGCGGCGCGAGUCCGCUUCUGUUUGCCGGACUGCCGCGCAUGCCGAGAUUC
..(((((((.(((....))).))))))).(((((((.......((....)).......)))))))(((((...((((((((((((........).))))))..))))).)))))...... ( -49.74)
>DroEre_CAF1 20209 120 - 1
CACGCUGGUUAUCCGCUGAUCGCCGGCGAUGGCUCCCCACCCAGUCCCCGCCUAUUUCUGAGCCACGGCAGCGGCGCGAGUCCGCUCCUCUUUGCCGGACUGCCGCGCAUGCCGAGAUUC
..(((((((.(((....))).))))))).((((((........((....))........))))))(((((...((((((((((((........).))))))..))))).)))))...... ( -49.59)
>DroYak_CAF1 3673 120 - 1
CACGCUGGUUAUCCGUUGAUCGCCGGCGAUGGUUCGCCACCCAGUCCCCGCCUAUUUUUGAGCCACGGCAGCGCAGCGAGUCCGCUUCUCUUUGCCGGACUGCCGCGCAUGCCGAGAUUC
..(((((((.(((....))).))))))).(((((((.......((....)).......)))))))(((((((((.((.(((((((........).)))))))).)))).)))))...... ( -49.74)
>consensus
CACGCUGGUUAUCCGCUGAUCGCCGGCGAUGGCUCGCCACCAAGUCCCCGCCUAUUUUUGAGCCACGGCGGCGGCGCGAGUCCGCUUCUGUUUGCCGGACUGCCGCGCAUGCCGAGAUUC
..(((((((.(((....))).))))))).(((((((.......((....)).......)))))))(((((...((((((((((((........).))))))..))))).)))))...... (-43.98 = -44.22 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:36 2006