| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,952,258 – 15,952,415 |
| Length | 157 |
| Max. P | 0.787359 |
| Location | 15,952,258 – 15,952,378 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.79 |
| Mean single sequence MFE | -22.94 |
| Consensus MFE | -21.04 |
| Energy contribution | -21.76 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.787359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15952258 120 - 22224390 AUAUGACGGAAUGGCAAUGGAAAUGCAAAUGCAAAUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGGAAACGAACAAAAUUUGAUUACAGAUUGCCGUUUACCGAAC ......((((((((((((.....((((........)))).......((((((((.(((((......)).)))......(....).........)))))).)).)))))))))..)))... ( -24.30) >DroSec_CAF1 20660 114 - 1 AUAUGACGGAAUGGCAAUGGAAAUGCAA------AUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGGAAACGAACUAAAUUUGAUUACAGAUUGCCGUUCACCGAAC ........((((((((((.....(((..------..))).......((((((((.(((((......)).)))......(....).........)))))).)).))))))))))....... ( -23.80) >DroSim_CAF1 15177 114 - 1 AUAUGACGGAAUGGCAAUGGAAAUGCAA------AUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGGAAACGAACUAAAUUUGAUUACAGAUUGCCGUUCACCGAAU ........((((((((((.....(((..------..))).......((((((((.(((((......)).)))......(....).........)))))).)).))))))))))....... ( -23.80) >DroEre_CAF1 19251 117 - 1 AUAUGACG--AUGGCAAUGGAAAUGCAAAUUCAAAUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGGAAACGAACAUAAUUUGAUUACAGAUUGCCGUUUAC-GAAC .......(--((((((((.....((((........)))).......((((((((.(((((......)).))).((((.(....)...))))..)))))).)).)))))))))...-.... ( -22.20) >DroYak_CAF1 2695 118 - 1 AUAUGACG--AUGGCAAUGGAAAUGCAAAUGCAAAUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGGAAACGAACAAAAUUUGAUUACAGAUUGCCGUUUACCGAAC .......(--((((((((.....((((........)))).......((((((((.(((((......)).)))......(....).........)))))).)).)))))))))........ ( -20.60) >consensus AUAUGACGGAAUGGCAAUGGAAAUGCAAAU_CAAAUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGGAAACGAACAAAAUUUGAUUACAGAUUGCCGUUUACCGAAC ........((((((((((.....((((........)))).......((((((((.(((((......)).)))......(....).........)))))).)).))))))))))....... (-21.04 = -21.76 + 0.72)
| Location | 15,952,298 – 15,952,415 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.38 |
| Mean single sequence MFE | -22.26 |
| Consensus MFE | -21.52 |
| Energy contribution | -21.52 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15952298 117 - 22224390 UUUAAUUGUAACUGAAAUAUUAAGUGUGUUGUAUAUG---AUAUGACGGAAUGGCAAUGGAAAUGCAAAUGCAAAUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGG ...........((...(((((((((((.((((...((---...((((...((((((.(....))))...(((....))).....)))..))))..))...)))).)))))))))))..)) ( -24.10) >DroSec_CAF1 20700 111 - 1 UUUUAUUGUAACUGAAAUAUUAAGUGUGUUGUAUAUG---AUAUGACGGAAUGGCAAUGGAAAUGCAA------AUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGG ...........((...(((((((((((((..(((...---)))..))((..((((.(((....(((..------..))).....)))..)))).)).........)))))))))))..)) ( -21.50) >DroSim_CAF1 15217 111 - 1 UUUUAUUGUAACUGAAAUAUUAAGUGUGUUGUAUAUG---AUAUGACGGAAUGGCAAUGGAAAUGCAA------AUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGG ...........((...(((((((((((((..(((...---)))..))((..((((.(((....(((..------..))).....)))..)))).)).........)))))))))))..)) ( -21.50) >DroEre_CAF1 19290 115 - 1 UUUUAUUGUAACUGAAAUAUUAAGUGUGUUGUAUAUG---AUAUGACG--AUGGCAAUGGAAAUGCAAAUUCAAAUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGG ...........((...(((((((((((.((((...((---...((((.--...(((.(....))))....(((.((.......)).)))))))..))...)))).)))))))))))..)) ( -21.70) >DroYak_CAF1 2735 118 - 1 UUUUAUUGUAACUGAAAUAUUAAGUGUGUUGUAUAUGAUGAUAUGACG--AUGGCAAUGGAAAUGCAAAUGCAAAUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGG ...........((...(((((((((((.((((...((.((...((((.--...(((.(....))))...(((....)))..........))))..)).)))))).)))))))))))..)) ( -22.50) >consensus UUUUAUUGUAACUGAAAUAUUAAGUGUGUUGUAUAUG___AUAUGACGGAAUGGCAAUGGAAAUGCAAAU_CAAAUGCAAAUAAUAUGAGUCAACCAACGACGAAACGCUUGAUAUGAGG ...........((...(((((((((((((..(((......)))..))....((((.(((....((((........)))).....)))..))))............)))))))))))..)) (-21.52 = -21.52 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:32 2006