Locus 6283

Sequence ID X_DroMel_CAF1
Location 15,951,198 – 15,951,303
Length 105
Max. P 0.803268
window10237

overview

Window 7

Location 15,951,198 – 15,951,303
Length 105
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 91.31
Mean single sequence MFE -33.67
Consensus MFE -27.15
Energy contribution -28.21
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.91
Structure conservation index 0.81
SVM decision value 0.62
SVM RNA-class probability 0.803268
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15951198 105 - 22224390
UAAGGGAAGCUCGUAAAUUUUGCUGCCCUGGCUGCGAGGGCGUUAGUGUCCAAAUAAAUAAAUGCAGUGCGGUGCGCCAGUAGAUACGAUACUGCACA-UGCAGUC
..((((.(((...........))).))))(((((((.(((((....)))))...............((((((((((..........)).)))))))).-))))))) ( -35.40)
>DroSec_CAF1 19581 105 - 1
UAAGGGAAGCUCGUAAAUUUUGCUGCCCGGGCUGCGAGGGCGUUAGUGUCCAAAUAAAUAAAUGCAGUGCGGUGCGCCAGUAGAUACGAUACUGCACA-UGCAGUC
...(((.(((...........))).))).(((((((.(((((....)))))...............((((((((((..........)).)))))))).-))))))) ( -34.70)
>DroSim_CAF1 14074 105 - 1
UAAGGGAAGCUCGUAAAUUUUGCUGCCCGGGCUGCGAGGGCGUUAGUGUCCAAAUAAAUAAAUGCAGUGCGGUGCGCCAGUAGAUACGAUACUGCACA-UGCAGUC
...(((.(((...........))).))).(((((((.(((((....)))))...............((((((((((..........)).)))))))).-))))))) ( -34.70)
>DroEre_CAF1 18267 93 - 1
UAGGGGAAGCUCGUAAAUUUUGCUGUCCUGGCUGCGAGGGCGUUAGUGUCCAAAUAAAUAAAUGCA-------------GUAGAUACGAUACUGCAGACUGCAGUC
..(((..(((...........)))..)))(((((((.(((((....)))))...........((((-------------(((.......)))))))...))))))) ( -29.90)
>consensus
UAAGGGAAGCUCGUAAAUUUUGCUGCCCGGGCUGCGAGGGCGUUAGUGUCCAAAUAAAUAAAUGCAGUGCGGUGCGCCAGUAGAUACGAUACUGCACA_UGCAGUC
...(((.(((...........))).))).(((((((.(((((....)))))...........(((((((((...............)).)))))))...))))))) (-27.15 = -28.21 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:30 2006