Locus 6281

Sequence ID X_DroMel_CAF1
Location 15,949,336 – 15,949,442
Length 106
Max. P 0.943457
window10233

overview

Window 3

Location 15,949,336 – 15,949,442
Length 106
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.71
Mean single sequence MFE -39.50
Consensus MFE -34.00
Energy contribution -34.25
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.86
SVM decision value 1.34
SVM RNA-class probability 0.943457
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15949336 106 + 22224390
AAGAACUUCGGUUGACGAUGCUGCCAACGUCAAUCGCUGGACUUCAGUUGGGAUGUUGGA--------------UGUUGGGGCGGUGGAGAACUGCCAUCGUAUCGAGAGCGUGUAGCAA
...(((....)))..((((((..((((((((...((((.(((....))).)).))...))--------------))))))((((((.....))))))...))))))...((.....)).. ( -39.80)
>DroSec_CAF1 17709 106 + 1
AAGAACUUCGGUUGACGAUGCUGCCAACGUCAAUCGCUGGACUUCAGUUGGGAUGUUGGA--------------UGUUGGGGCGGUGGAGAACUGCCAUCGUAUCGAGAGCGUGUAGCAA
...(((....)))..((((((..((((((((...((((.(((....))).)).))...))--------------))))))((((((.....))))))...))))))...((.....)).. ( -39.80)
>DroSim_CAF1 12179 106 + 1
AAGAACUUCGGUUGACGAUGCUGCCAACGUCAAUCGCUGGACUUCAGUUGGGAUGUUGGA--------------UGUUGGGGCGGUGGAGAACUGCCAUCGUAUCGAGAGCGUGUAGCAA
...(((....)))..((((((..((((((((...((((.(((....))).)).))...))--------------))))))((((((.....))))))...))))))...((.....)).. ( -39.80)
>DroEre_CAF1 16686 115 + 1
AA-----UCGGUUGACGAUGCUGCCAACGUCAAUCGCUGGACUUCAGUUGGGAUGUUGGAUGUUGGAAGUUGGAUGUUGGGGCGGCGGAGAACUGCCAUCGUAUCGAGAGCGUGUAGCGA
..-----(((((..((((((((.(((((((((((..(..(..(((((........)))))..)..)..))).)))))))))))(((((....)))))))))))))))..((.....)).. ( -38.60)
>consensus
AAGAACUUCGGUUGACGAUGCUGCCAACGUCAAUCGCUGGACUUCAGUUGGGAUGUUGGA______________UGUUGGGGCGGUGGAGAACUGCCAUCGUAUCGAGAGCGUGUAGCAA
.......(((((..(((((....((((((((....((((.....))))...)))))))).....................((((((.....))))))))))))))))..((.....)).. (-34.00 = -34.25 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:26 2006