Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,736,651 – 1,736,763 |
Length | 112 |
Max. P | 0.946725 |
Location | 1,736,651 – 1,736,763 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 93.44 |
Mean single sequence MFE | -29.72 |
Consensus MFE | -26.80 |
Energy contribution | -26.60 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.21 |
Mean z-score | -1.52 |
Structure conservation index | 0.90 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.946725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1736651 112 + 22224390 UUUGCUGGCAUCAAUAUUUAAUCUGUUGCCUAGCGUGACAGUCGGCCACACUGCACCUCA--CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUC ...(((((((((...........(((((...((.(((.((((.(....))))))))))..--..)))))............((((....))))..))))))))).......... ( -27.10) >DroSec_CAF1 3103 112 + 1 UUUGCUGGCAUCGAUAUUCAGGCUGUUGCCUAGCGUGACAGUCGGCCACACUGGACCUCA--CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUC ...(((((((((....(((.((((((..(.....)..))))))((((.....)).))...--............)))....((((....))))..))))))))).......... ( -34.50) >DroSim_CAF1 2572 112 + 1 UUUGUUGGCAUCGAUAUUCAGGCUGUUGCCUAGCGUGACAGUCGGCCACACUGGACCUCA--CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUC ...(((((((((....(((.((((((..(.....)..))))))((((.....)).))...--............)))....((((....))))..))))))))).......... ( -32.10) >DroEre_CAF1 978 112 + 1 UUUGUUGGCACUCAAAUUUAGGUUGUUACCUAGCGUCACAGUCGGCCACACUGGACCUCA--CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUU ...(((((((((........((((((((...((.(((.((((.(....))))))))))..--..)))))..))).......((((....))))..))))))))).......... ( -28.00) >DroYak_CAF1 10078 114 + 1 UUUGUUGGCAUCCAUAUUUAGGCUGUUACCUAGCGUCACAGUCGGCCACACUGGACCUCACACAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUU ...(((((((((.((((((.((((((.((.....)).))))))((((.....)).))............................))))))....))))))))).......... ( -26.90) >consensus UUUGUUGGCAUCCAUAUUUAGGCUGUUGCCUAGCGUGACAGUCGGCCACACUGGACCUCA__CAUAACAUAACCGAAAAAUGAACAAAUGUUUUAGGUGCCAGCCCCGGAUAUC ...(((((((((....(((.(((((((((.....)))))))))((((.....)).)).................)))....((((....))))..))))))))).......... (-26.80 = -26.60 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:47 2006